6vbs

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='6vbs' size='340' side='right'caption='[[6vbs]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
<StructureSection load='6vbs' size='340' side='right'caption='[[6vbs]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6vbs]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_typhimurium"_loeffler_1892 "bacillus typhimurium" loeffler 1892]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6VBS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6VBS FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6vbs]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6VBS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6VBS FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[6d52|6d52]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">sodC1, AAP89_24585, ABO94_13165, AF480_24525, AF488_17800, AF489_22535, AIC76_23135, AU613_25900, AXR84_22600, AXU58_25005, C2253_23510, CD48_19550, CE87_24875, CET98_19490, CQG18_24025, CVR97_00185, D4369_24860, D4380_23405, D4401_24550, D4E62_23815, D6360_24640, D7F20_18080, D7H43_24310, DD95_21320, DJ388_22940, DKJ11_15870, DKU57_23325, DLM31_21285, DO698_19845, DOJ90_22365, DOQ88_23710, DQ848_24435, DRM14_23695, DSF69_10260, DSR36_22945, DUW48_23400, EBO41_23675, EBP31_23480, EGU67_12495, EHB24_23490, EHC98_23755, EIW53_22710, F0A00_10055, F0A01_03930, F0A02_16630, F0A03_14260, F0A04_11295, F0A05_20695, F0A06_10485, F0U66_16995, FKA80_23505, FKA81_22545, FKA82_23465, FKA83_23450, FKA84_23540, FKA85_22415, FKA86_23320, FKA87_22565, FKA88_23655, FKA89_19440, FKA90_23025, FKA91_22685, FKA92_23550, FKA93_23530, FKA94_23705, FKA95_23590, FKA96_23695, FKA97_23460, FKA98_23465, FKA99_23670, FKB00_23595, FKB01_23750, FKB02_23725, FKB03_23595, FKB12_23280, FKB15_23500, FKB18_22510, FKB19_23085, FYL57_20425, FYL66_21285, FYL68_13470, FYL69_02095, FYL71_08605, FYL73_12165, FYL74_21170, FYL75_22020, FYL77_03645, FYL81_07750, FYL84_20475, FYL90_20575, FYL92_04365, FYL93_18435, FYL94_21135, FYL96_21895, FYM06_15765, FYM08_18765, FYM09_02430, FYM54_04305, FZ992_22195, FZ993_21050, FZ994_04265, FZ995_00435, FZ996_12505, FZ997_14980, FZ998_14695, FZ999_05915, GW08_24555, JO10_24570, LZ63_20420, NCTC13348_01621, NG18_23390, NU83_09530, QA89_23615, QD15_24180, RJ78_24990, SAMEA4398682_02945, Y934_24990, YG50_23900, YI33_24375, YR17_24730, ZB89_24710, ZC54_24870 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 "Bacillus typhimurium" Loeffler 1892])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6vbs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vbs OCA], [https://pdbe.org/6vbs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6vbs RCSB], [https://www.ebi.ac.uk/pdbsum/6vbs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6vbs ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6vbs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vbs OCA], [https://pdbe.org/6vbs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6vbs RCSB], [https://www.ebi.ac.uk/pdbsum/6vbs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6vbs ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/A0A0D6GQL3_SALTM A0A0D6GQL3_SALTM]] Destroys radicals which are normally produced within the cells and which are toxic to biological systems.[RuleBase:RU000393]
+
[https://www.uniprot.org/uniprot/SODC1_SALTY SODC1_SALTY] Destroys radicals which are normally produced within the cells and which are toxic to biological systems.
 +
 
 +
==See Also==
 +
*[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus typhimurium loeffler 1892]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Superoxide dismutase]]
+
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
-
[[Category: Forest, K T]]
+
[[Category: Forest KT]]
-
[[Category: Newhouse, P W]]
+
[[Category: Newhouse PW]]
-
[[Category: Satyshur, K A]]
+
[[Category: Satyshur KA]]
-
[[Category: Oxygen binding]]
+
-
[[Category: Peptidoglycan binding]]
+
-
[[Category: Virulence factor]]
+

Revision as of 08:08, 11 October 2023

The C2 Crystal form of SodCI Superoxide Dismutase at 1.7 A resolution with 6 molecules in the asymmetric unit.

PDB ID 6vbs

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6vbs"
Personal tools