5vgm

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Current revision (13:48, 4 October 2023) (edit) (undo)
 
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<StructureSection load='5vgm' size='340' side='right'caption='[[5vgm]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
<StructureSection load='5vgm' size='340' side='right'caption='[[5vgm]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5vgm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillo_virgola_del_koch"_trevisan_1884 "bacillo virgola del koch" trevisan 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VGM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5VGM FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5vgm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VGM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5VGM FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSX:S-OXY+CYSTEINE'>CSX</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CSX:S-OXY+CYSTEINE'>CSX</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pyrC, BSN91_03690, EN12_18175, ERS013140_03537, ERS013198_00138, ERS013199_01662 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=666 "Bacillo virgola del Koch" Trevisan 1884])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Dihydroorotase Dihydroorotase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.2.3 3.5.2.3] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5vgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vgm OCA], [https://pdbe.org/5vgm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5vgm RCSB], [https://www.ebi.ac.uk/pdbsum/5vgm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5vgm ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5vgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vgm OCA], [https://pdbe.org/5vgm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5vgm RCSB], [https://www.ebi.ac.uk/pdbsum/5vgm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5vgm ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PYRC_VIBCH PYRC_VIBCH] Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.[HAMAP-Rule:MF_00219]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 5vgm" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5vgm" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Dihydroorotase 3D structures|Dihydroorotase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Bacillo virgola del koch trevisan 1884]]
 
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[[Category: Dihydroorotase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Anderson, W F]]
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[[Category: Vibrio cholerae]]
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[[Category: Structural genomic]]
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[[Category: Anderson WF]]
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[[Category: Cooper, D R]]
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[[Category: Cooper DR]]
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[[Category: Kwon, K]]
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[[Category: Kwon K]]
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[[Category: Lewinski, K]]
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[[Category: Lewinski K]]
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[[Category: Lipowska, J]]
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[[Category: Lipowska J]]
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[[Category: Miks, C D]]
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[[Category: Miks CD]]
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[[Category: Minor, W]]
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[[Category: Minor W]]
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[[Category: Shabalin, I G]]
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[[Category: Shabalin IG]]
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[[Category: Shuvalova, L]]
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[[Category: Shuvalova L]]
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[[Category: Winsor, J]]
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[[Category: Winsor J]]
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[[Category: Csgid]]
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[[Category: Hydrolase]]
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[[Category: Psi-biology]]
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Current revision

Crystal structure of dihydroorotase pyrC from Vibrio cholerae in complex with zinc at 1.95 A resolution.

PDB ID 5vgm

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OCA

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