Sandbox Reserved 1715

From Proteopedia

(Difference between revisions)

Revision as of 05:48, 28 March 2022

Metabotropic Glutamate Receptor

Metabotropic glutamate receptor

^[1]

^[2]

1 Introduction
2 Structural Highlights
- 2.1 Domains
3 Conformational Changes
4 Clinical Relevance
- 4.1 Disease

Introduction

Within the central nervous system (CNS), various receptors exist to detect extracellular molecules and thus communicate intracellularly. Found in eukaryotes and known for its seven transmembrane helices, one type of receptor is the G-protein coupled receptor (GPCR). The metabotropic glutamate receptor (mGlu), a Class C GPCR, is an essential receptor utilized in glutamate signaling. These proteins are specifically found in the pre- and postsynaptic neurons of the CNS. Eight different mGlu subtypes exist which are divided into three groups (I, II, III). While each mGlu has a slightly different function and location, the structures of the different mGlu subtypes are very similar (Table1). For each group, binding of the neurotransmitter glutamate to the mGlu introduces a conformational change that can activate a G-protein.

Group	mGlu Type	Location	Function
I	mGlu1 mGlu5	Postsynaptic neurons	Activates calcium channels Excites adenylyl cyclase
II	mGlu2 mGlu3	Presynaptic neurons	Activates potassium channels Inhibits calcium channels Inhibits adenylyl cyclase
III	mGlu4 mGlu6 mGlu7 mGlu8	Presynaptic neurons	Activates potassium channels Inhibits calcium channels Inhibits adenylyl cyclase

In order to activate the mGlu transformation, glutamate acts as the protein’s main agonist. Glutamate is an acidic, polar amino acid. (picture) This agonist binds to the extracellular portion of the protein allowing the homodimer to change conformationally. This change allows for a signaling cascade within the cell that can ultimately lead to the modification of other proteins and a difference in the synapse’s excitability. However, in mGlu, the binding affinity of glutamate is determined by either a positive (PAM) or negative (NAM) allosteric modulator.

^[1]

^[2]

Structural Highlights

mGlu receptors are dimeric proteins consisting of an . While a heterodimer of different mGlu subtypes can form, only homodimeric receptors can become active. Both the alpha and beta chains are comprised of : the venus fly trap (VFT), cysteine rich domain (CRD), and the transmembrane domain (TMD).

Figure 1. Cysteine 121 positioning in the inactive (left) vs the active (right) mGlu conformation

Domains

VFT: The extracellular location in which the two glutamate agonists bind is known as the VFT. This domain includes a disulfide bond which is shifted down in the inactive form and undergoes an upward movement upon glutamate binding which stabilizes the active site (Figure 1).

CRD: The portion of the protomer that connects the VFT with the TMD is known as the CRD. As the linking segment of the protein, is critical in transmitting the conformational change caused by the binding of glutamate to the TMD. The change resulting from the binding of glutamate in the VFT brings the cysteine-rich domain together to alter the configuration of the TMD through its interaction with the extracellular loop 2 (ECL2). This process is mediated by the hydrophobic effect due to the nature of the amino acids at the apex of the CRD.( 3D IMAGE)

TMD: The TMD consists of seven transmembrane helices that are responsible for G-protein interactions. In the inactive form, the asymmetric conformation of the helices is mediated by the hydrophobicity of helix 3 and 4. Along with the interaction of the CRD with the ECL2 of the TMD, an allosteric modulator must bind within the transmembrane helices to allow for the confirmation of the helices to be altered. This conformation allows for a dimer interface along helix 6 (citation article 2) . The stabilization of this conformation allows for G protein coupling with ICL2, ICL3, TM Helix 3 and the C terminus.

Conformational Changes

1. mGlu starts in an . In this conformation, the receptor is considered open with an inter-lobe angle of 44 degrees.The structure has two free binding sites in the VFT, the CRDs are separated, and the TMD is not interacting with a G protein.

Figure 2. The interaction between an active mGlu and a G-protein

2. In the intermediate activation state (known as the open-closed conformation), one glutamate is bound in one binding pocket of VFT. This is still considered inactive as the receptor has not changed the conformations in the CRD and thus the TMD. With the same asymmetric transmembrane helices formation, a TM3-TM4 interface is still present and mGlu cannot interact with a G protein. (IMAGE)

3. A second glutamate binds to the other of the VFT. Mediated by L639, F643, N735, W773, and F776, a positive allosteric modulator (PAM) also binds within the seven TMD helices of the alpha chain. This closed conformation with an inter-lobe domain of 25 degrees is considered the . The binding of these ligands allows the CRD to compact and come together. This transformation causes the TMD to form another asymmetric conformation with a TM6-TM6 interface between the chains.

4. The change in the arrangement of the helices allows for intracellular loop 2 (ICL2) and the C-terminus to be properly ordered to interact with a G protein. While hydrogen bonding is present, this coupling is primarily driven by the hydrophobic interactions in the interface with the ɑ5 helix of the G protein.. This coupling can only occur in the presence of a PAM as the pocket in which the coupling occurs would be completely closed in its absence.

5. Depending on the type of mGlu present, different signaling cascades will occur within the cell. These cascades are necessary for cellular function and can lead to various diseases.

Clinical Relevance

Disease

References

↑ ^1.0 ^1.1 Ransey E, Paredes E, Dey SK, Das SR, Heroux A, Macbeth MR. Crystal structure of the Entamoeba histolytica RNA lariat debranching enzyme EhDbr1 reveals a catalytic Zn(2+) /Mn(2+) heterobinucleation. FEBS Lett. 2017 Jul;591(13):2003-2010. doi: 10.1002/1873-3468.12677. Epub 2017, Jun 14. PMID:28504306 doi:http://dx.doi.org/10.1002/1873-3468.12677
↑ ^2.0 ^2.1 Seven AB, Barros-Alvarez X, de Lapeyriere M, Papasergi-Scott MM, Robertson MJ, Zhang C, Nwokonko RM, Gao Y, Meyerowitz JG, Rocher JP, Schelshorn D, Kobilka BK, Mathiesen JM, Skiniotis G. G-protein activation by a metabotropic glutamate receptor. Nature. 2021 Jun 30. pii: 10.1038/s41586-021-03680-3. doi:, 10.1038/s41586-021-03680-3. PMID:34194039 doi:http://dx.doi.org/10.1038/s41586-021-03680-3

Student Contributors

Courtney Vennekotter
Cade Chezem

Retrieved from "http://52.214.119.220/wiki/index.php/Sandbox_Reserved_1715"

@@ Line 49: / Line 49: @@
 [[Image: Active vs inactive vft.png|150px|left|thumb|Figure 1. Cysteine 121 positioning in the inactive (left) vs the active (right) mGlu conformation ]]
 ==== Domains ====
-'''VFT''': The extracellular location in which the two glutamate agonists bind is known as the VFT. This domain includes a disulfide bond which is shifted down in the inactive form (IMAGE) and undergoes an upward movement upon glutamate binding which stabilizes the active site.
+'''VFT''': The extracellular location in which the two glutamate agonists bind is known as the VFT. This domain includes a disulfide bond which is shifted down in the inactive form and undergoes an upward movement upon glutamate binding which stabilizes the active site (Figure 1).
 '''CRD''': The portion of the protomer that connects the VFT with the TMD is known as the CRD. As the linking segment of the protein, is critical in transmitting the conformational change caused by the binding of glutamate to the TMD. The change resulting from the binding of glutamate in the VFT brings the cysteine-rich domain together to alter the configuration of the TMD through its interaction with the extracellular loop 2 (ECL2). This process is mediated by the hydrophobic effect due to the nature of the amino acids at the apex of the CRD.( 3D IMAGE)
@@ Line 57: / Line 57: @@
 == Conformational Changes ==
-'''1.''' mGlu starts in an <scene name='90/904320/Inactive_mglu/2'>inactive homodimeric form</scene>. In this conformation, the receptor is considered open with an inter-lobe angle of 44 degrees.The structure has two free binding sites in the VFT, the CRDs are separated, and the TMD is not interacting with a G protein. [[Image: Protein Interaction with G Protein.png|300 px|right|thumb|Figure 1. The interaction between an active mGlu and a G-protein ]]
+'''1.''' mGlu starts in an <scene name='90/904320/Inactive_mglu/2'>inactive homodimeric form</scene>. In this conformation, the receptor is considered open with an inter-lobe angle of 44 degrees.The structure has two free binding sites in the VFT, the CRDs are separated, and the TMD is not interacting with a G protein. [[Image: Protein Interaction with G Protein.png|300 px|right|thumb|Figure 2. The interaction between an active mGlu and a G-protein ]]
 '''2.''' In the intermediate activation state (known as the open-closed conformation), one glutamate is bound in one binding pocket of VFT. This <scene name='90/904320/Mglu_binding/4'>glutamate bound state</scene> is still considered inactive as the receptor has not changed the conformations in the CRD and thus the TMD. With the same asymmetric transmembrane helices formation, a TM3-TM4 interface is still present and mGlu cannot interact with a G protein. (IMAGE)
-'''3.''' A second glutamate binds to the other <scene name='90/904320/Active_site_interactions/3'>binding pocket</scene> of the VFT. Mediated by L639, F643, N735, W773, and F776, a positive allosteric modulator (PAM) also binds within the seven TMD helices of the alpha chain. This closed conformation with an inter-lobe domain of 25 degrees is considered the active conformation. The binding of these ligands allows the CRD to compact and come together. This transformation causes the TMD to form another asymmetric conformation with a TM6-TM6 interface between the chains.
+'''3.''' A second glutamate binds to the other <scene name='90/904320/Active_site_interactions/3'>binding pocket</scene> of the VFT. Mediated by L639, F643, N735, W773, and F776, a positive allosteric modulator (PAM) also binds within the seven TMD helices of the alpha chain. This closed conformation with an inter-lobe domain of 25 degrees is considered the <scene name='90/904319/active conformation/1'>PAM</scene>. The binding of these ligands allows the CRD to compact and come together. This transformation causes the TMD to form another asymmetric conformation with a TM6-TM6 interface between the chains.
 '''4.''' The change in the arrangement of the helices allows for intracellular loop 2 (ICL2)  and the C-terminus to be properly ordered to interact with a G protein. While hydrogen bonding is present, this coupling is primarily driven by the hydrophobic interactions in the interface with the ɑ5 helix of the G protein.. This coupling can only occur in the presence of a PAM as the pocket in which the coupling occurs would be completely closed in its absence.

Sandbox Reserved 1715

From Proteopedia

Revision as of 05:48, 28 March 2022

Metabotropic Glutamate Receptor

Contents

Introduction

Structural Highlights

Domains

Conformational Changes

Clinical Relevance

Disease

References

Student Contributors

Views

Personal tools

Navigation

Search

Toolbox