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2vnp

From Proteopedia

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Current revision (15:26, 13 December 2023) (edit) (undo)
 
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<StructureSection load='2vnp' size='340' side='right'caption='[[2vnp]], [[Resolution|resolution]] 2.19&Aring;' scene=''>
<StructureSection load='2vnp' size='340' side='right'caption='[[2vnp]], [[Resolution|resolution]] 2.19&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2vnp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ecobb Ecobb]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2veh 2veh]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VNP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VNP FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2vnp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_BL21 Escherichia coli BL21]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2veh 2veh]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VNP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VNP FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DED:2-DIMETHYLAMINO-ETHYL-DIPHOSPHATE'>DED</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.19&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1nfs|1nfs]], [[1q54|1q54]], [[1ppv|1ppv]], [[1ow2|1ow2]], [[1ppw|1ppw]], [[1x84|1x84]], [[1i9a|1i9a]], [[1nfz|1nfz]], [[1r67|1r67]], [[1x83|1x83]], [[1hx3|1hx3]], [[1hzt|1hzt]], [[1pvf|1pvf]], [[2vnq|2vnq]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DED:2-DIMETHYLAMINO-ETHYL-DIPHOSPHATE'>DED</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Isopentenyl-diphosphate_Delta-isomerase Isopentenyl-diphosphate Delta-isomerase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.3.2 5.3.3.2] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vnp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vnp OCA], [https://pdbe.org/2vnp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vnp RCSB], [https://www.ebi.ac.uk/pdbsum/2vnp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vnp ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vnp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vnp OCA], [https://pdbe.org/2vnp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vnp RCSB], [https://www.ebi.ac.uk/pdbsum/2vnp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vnp ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/IDI_ECOLI IDI_ECOLI]] Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).<ref>PMID:10099534</ref> <ref>PMID:9603997</ref>
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[https://www.uniprot.org/uniprot/IDI_ECOLI IDI_ECOLI] Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).<ref>PMID:10099534</ref> <ref>PMID:9603997</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Ecobb]]
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[[Category: Escherichia coli BL21]]
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[[Category: Isopentenyl-diphosphate Delta-isomerase]]
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[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Oudjama, Y]]
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[[Category: Oudjama Y]]
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[[Category: Ruyck, J de]]
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[[Category: Wouters J]]
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[[Category: Wouters, J]]
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[[Category: De Ruyck J]]
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[[Category: Cytoplasm]]
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[[Category: Ipp isomerase]]
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[[Category: Isomerase]]
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[[Category: Isoprene biosynthesis]]
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[[Category: Magnesium]]
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[[Category: Manganese]]
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[[Category: Metal-binding]]
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[[Category: Polymorphism]]
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Current revision

Monoclinic form of IDI-1

PDB ID 2vnp

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OCA

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