7v94

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Current revision (05:16, 12 June 2024) (edit) (undo)
 
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==Cryo-EM structure of the Cas12c2-sgRNA-target DNA ternary complex==
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<StructureSection load='7v94' size='340' side='right'caption='[[7v94]]' scene=''>
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<StructureSection load='7v94' size='340' side='right'caption='[[7v94]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
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<table><tr><td colspan='2'>[[7v94]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct] and [https://en.wikipedia.org/wiki/Uncultured_archaeon Uncultured archaeon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7V94 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7V94 FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7v94 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7v94 OCA], [https://pdbe.org/7v94 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7v94 RCSB], [https://www.ebi.ac.uk/pdbsum/7v94 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7v94 ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7v94 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7v94 OCA], [https://pdbe.org/7v94 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7v94 RCSB], [https://www.ebi.ac.uk/pdbsum/7v94 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7v94 ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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RNA-guided CRISPR-Cas nucleases are widely used as versatile genome-engineering tools. Recent studies identified functionally divergent type V Cas12 family enzymes. Among them, Cas12c2 binds a CRISPR RNA (crRNA) and a trans-activating crRNA (tracrRNA) and recognizes double-stranded DNA targets with a short TN PAM. Here, we report the cryo-electron microscopy structures of the Cas12c2-guide RNA binary complex and the Cas12c2-guide RNA-target DNA ternary complex. The structures revealed that the crRNA and tracrRNA form an unexpected X-junction architecture, and that Cas12c2 recognizes a single T nucleotide in the PAM through specific hydrogen-bonding interactions with two arginine residues. Furthermore, our biochemical analyses indicated that Cas12c2 processes its precursor crRNA to a mature crRNA using the RuvC catalytic site through a unique mechanism. Collectively, our findings improve the mechanistic understanding of diverse type V CRISPR-Cas effectors.
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Structure of the type V-C CRISPR-Cas effector enzyme.,Kurihara N, Nakagawa R, Hirano H, Okazaki S, Tomita A, Kobayashi K, Kusakizako T, Nishizawa T, Yamashita K, Scott DA, Nishimasu H, Nureki O Mol Cell. 2022 May 19;82(10):1865-1877.e4. doi: 10.1016/j.molcel.2022.03.006. , Epub 2022 Apr 1. PMID:35366394<ref>PMID:35366394</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 7v94" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Z-disk]]
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[[Category: Synthetic construct]]
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[[Category: Uncultured archaeon]]
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[[Category: Hirano H]]
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[[Category: Kobayashi K]]
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[[Category: Kurihara N]]
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[[Category: Kusakizako T]]
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[[Category: Nishimasu H]]
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[[Category: Nishizawa T]]
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[[Category: Nureki O]]
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[[Category: Tomita A]]
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[[Category: Yamashita K]]

Current revision

Cryo-EM structure of the Cas12c2-sgRNA-target DNA ternary complex

PDB ID 7v94

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