This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
4dgt
From Proteopedia
(Difference between revisions)
| Line 3: | Line 3: | ||
<StructureSection load='4dgt' size='340' side='right'caption='[[4dgt]], [[Resolution|resolution]] 1.55Å' scene=''> | <StructureSection load='4dgt' size='340' side='right'caption='[[4dgt]], [[Resolution|resolution]] 1.55Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[4dgt]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[4dgt]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridioides_difficile_630 Clostridioides difficile 630]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DGT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DGT FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr> | |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dgt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dgt OCA], [https://pdbe.org/4dgt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dgt RCSB], [https://www.ebi.ac.uk/pdbsum/4dgt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dgt ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dgt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dgt OCA], [https://pdbe.org/4dgt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dgt RCSB], [https://www.ebi.ac.uk/pdbsum/4dgt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dgt ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q183G9_CLOD6 Q183G9_CLOD6] | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Clostridioides difficile 630]] |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Anderson | + | [[Category: Anderson WF]] |
| - | + | [[Category: Chruszcz M]] | |
| - | [[Category: Chruszcz | + | [[Category: Cooper DR]] |
| - | [[Category: Cooper | + | [[Category: Grimshaw S]] |
| - | [[Category: Grimshaw | + | [[Category: Kudritska M]] |
| - | [[Category: Kudritska | + | [[Category: Minor W]] |
| - | [[Category: Minor | + | [[Category: Onopriyenko O]] |
| - | [[Category: Onopriyenko | + | [[Category: Porebski PJ]] |
| - | [[Category: Porebski | + | [[Category: Savchenko A]] |
| - | [[Category: Savchenko | + | [[Category: Shabalin IG]] |
| - | [[Category: Shabalin | + | |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of PLP-bound putative aminotransferase from Clostridium difficile 630 crystallized with magnesium formate
| |||||||||||
