We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.
7pwy
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Structure of human dimeric ACMSD in complex with the inhibitor TES-1025== | ==Structure of human dimeric ACMSD in complex with the inhibitor TES-1025== | ||
| - | <StructureSection load='7pwy' size='340' side='right'caption='[[7pwy]]' scene=''> | + | <StructureSection load='7pwy' size='340' side='right'caption='[[7pwy]], [[Resolution|resolution]] 2.50Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7PWY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7PWY FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7pwy]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7PWY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7PWY FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7pwy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7pwy OCA], [https://pdbe.org/7pwy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7pwy RCSB], [https://www.ebi.ac.uk/pdbsum/7pwy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7pwy ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8EK:2-[3-[(5-cyano-6-oxidanylidene-4-thiophen-2-yl-1H-pyrimidin-2-yl)sulfanylmethyl]phenyl]ethanoic+acid'>8EK</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
| + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Aminocarboxymuconate-semialdehyde_decarboxylase Aminocarboxymuconate-semialdehyde decarboxylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.45 4.1.1.45] </span></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7pwy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7pwy OCA], [https://pdbe.org/7pwy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7pwy RCSB], [https://www.ebi.ac.uk/pdbsum/7pwy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7pwy ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [[https://www.uniprot.org/uniprot/ACMSD_HUMAN ACMSD_HUMAN]] Converts alpha-amino-beta-carboxymuconate-epsilon-semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate (QA), a key precursor of NAD, and a potent endogenous excitotoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of ACMSD, ACMS is converted to AMS, a benign catabolite. ACMSD ultimately controls the metabolic fate of tryptophan catabolism along the kynurenine pathway.<ref>PMID:19843166</ref> <ref>PMID:12140278</ref> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Human alpha-amino-beta-carboxymuconate-epsilon-semialdehyde decarboxylase (ACMSD) stands at a branch point of the de novo NAD(+) synthesis pathway and plays an important role in maintaining NAD(+) homeostasis. It has been recently identified as a novel therapeutic target for a wide range of diseases, including inflammatory, metabolic disorders, and aging. So far, in absence of potent and selective enzyme inhibitors, only a crystal structure of the complex of human dimeric ACMSD with pseudo-substrate dipicolinic acid has been resolved. In this study, we report the crystal structure of the complex of human dimeric ACMSD with TES-1025, the first nanomolar inhibitor of this target, which shows a binding conformation different from the previously published predicted binding mode obtained by docking experiments. The inhibitor has a K i value of 0.85 +/- 0.22 nM and binds in the catalytic site, interacting with the Zn(2+) metal ion and with residues belonging to both chains of the dimer. The results provide new structural information about the mechanism of inhibition exerted by a novel class of compounds on the ACMSD enzyme, a novel therapeutic target for liver and kidney diseases. | ||
| + | |||
| + | Structural Basis of Human Dimeric alpha-Amino-beta-Carboxymuconate-epsilon-Semialdehyde Decarboxylase Inhibition With TES-1025.,Cianci M, Giacche N, Cialabrini L, Carotti A, Liscio P, Rosatelli E, De Franco F, Gasparrini M, Robertson J, Amici A, Raffaelli N, Pellicciari R Front Mol Biosci. 2022 Apr 7;9:834700. doi: 10.3389/fmolb.2022.834700., eCollection 2022. PMID:35463964<ref>PMID:35463964</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 7pwy" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Aminocarboxymuconate-semialdehyde decarboxylase]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Amici A]] | + | [[Category: Amici, A]] |
| - | [[Category: Carotti A]] | + | [[Category: Carotti, A]] |
| - | [[Category: Cialabrini L]] | + | [[Category: Cialabrini, L]] |
| - | [[Category: Cianci M]] | + | [[Category: Cianci, M]] |
| - | [[Category: | + | [[Category: Franco, F De]] |
| - | [[Category: Giacche N]] | + | [[Category: Giacche, N]] |
| - | [[Category: Liscio P]] | + | [[Category: Liscio, P]] |
| - | [[Category: Pellicciari R]] | + | [[Category: Pellicciari, R]] |
| - | [[Category: Raffaelli N]] | + | [[Category: Raffaelli, N]] |
| + | [[Category: Acmsd]] | ||
| + | [[Category: De-novo nad+ synthesis]] | ||
| + | [[Category: Decarboxylase]] | ||
| + | [[Category: Lyase]] | ||
| + | [[Category: Tes-1025]] | ||
Revision as of 06:31, 12 May 2022
Structure of human dimeric ACMSD in complex with the inhibitor TES-1025
| |||||||||||
