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| | <StructureSection load='3iau' size='340' side='right'caption='[[3iau]], [[Resolution|resolution]] 2.35Å' scene=''> | | <StructureSection load='3iau' size='340' side='right'caption='[[3iau]], [[Resolution|resolution]] 2.35Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[3iau]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lycopersicon_esculentum Lycopersicon esculentum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IAU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IAU FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3iau]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Solanum_lycopersicum Solanum lycopersicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IAU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IAU FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=15P:POLYETHYLENE+GLYCOL+(N=34)'>15P</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.353Å</td></tr> |
| - | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene></td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=15P:POLYETHYLENE+GLYCOL+(N=34)'>15P</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TD ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4081 Lycopersicon esculentum])</td></tr>
| + | |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Threonine_ammonia-lyase Threonine ammonia-lyase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.3.1.19 4.3.1.19] </span></td></tr>
| + | |
| | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3iau FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iau OCA], [https://pdbe.org/3iau PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3iau RCSB], [https://www.ebi.ac.uk/pdbsum/3iau PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3iau ProSAT], [https://www.topsan.org/Proteins/CESG/3iau TOPSAN]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3iau FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iau OCA], [https://pdbe.org/3iau PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3iau RCSB], [https://www.ebi.ac.uk/pdbsum/3iau PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3iau ProSAT], [https://www.topsan.org/Proteins/CESG/3iau TOPSAN]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/TD2_SOLLC TD2_SOLLC] Not required for normal growth and development of the plant (PubMed:21436043).<ref>PMID:21436043</ref> Involved in defense against lepidopteran, but not coleopteran herbivore insects (PubMed:17416643, PubMed:21436043). Acts in the insect gut to degrade threonine, which is an essential and limiting nutrient for the growth of lepidopteran larvae (Probable). Active against both L-threonine and L-serine (PubMed:17416643).<ref>PMID:17416643</ref> <ref>PMID:21436043</ref> |
| | == Evolutionary Conservation == | | == Evolutionary Conservation == |
| | [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| | <jmolCheckbox> | | <jmolCheckbox> |
| | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ia/3iau_consurf.spt"</scriptWhenChecked> | | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ia/3iau_consurf.spt"</scriptWhenChecked> |
| - | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> |
| | <text>to colour the structure by Evolutionary Conservation</text> | | <text>to colour the structure by Evolutionary Conservation</text> |
| | </jmolCheckbox> | | </jmolCheckbox> |
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| | </StructureSection> | | </StructureSection> |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Lycopersicon esculentum]] | + | [[Category: Solanum lycopersicum]] |
| - | [[Category: Threonine ammonia-lyase]]
| + | [[Category: Bianchetti CM]] |
| - | [[Category: Bianchetti, C M]] | + | [[Category: Bingman CA]] |
| - | [[Category: Bingman, C A]] | + | [[Category: Phillips Jr GN]] |
| - | [[Category: Structural genomic]]
| + | |
| - | [[Category: Phillips, G N]] | + | |
| - | [[Category: Allosteric enzyme]]
| + | |
| - | [[Category: Amino-acid biosynthesis]]
| + | |
| - | [[Category: Branched-chain amino acid biosynthesis]]
| + | |
| - | [[Category: Cesg]]
| + | |
| - | [[Category: Chloroplast]]
| + | |
| - | [[Category: Defensive protein]]
| + | |
| - | [[Category: Isoleucine biosynthesis]]
| + | |
| - | [[Category: Jasmonic acid]]
| + | |
| - | [[Category: Jasmonic acid pathway]]
| + | |
| - | [[Category: Lyase]]
| + | |
| - | [[Category: PSI, Protein structure initiative]]
| + | |
| - | [[Category: Pyridoxal phosphate]]
| + | |
| - | [[Category: Transit peptide]]
| + | |
| Structural highlights
3iau is a 2 chain structure with sequence from Solanum lycopersicum. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
| | Method: | X-ray diffraction, Resolution 2.353Å |
| Ligands: | , , , |
| Resources: | FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN |
Function
TD2_SOLLC Not required for normal growth and development of the plant (PubMed:21436043).[1] Involved in defense against lepidopteran, but not coleopteran herbivore insects (PubMed:17416643, PubMed:21436043). Acts in the insect gut to degrade threonine, which is an essential and limiting nutrient for the growth of lepidopteran larvae (Probable). Active against both L-threonine and L-serine (PubMed:17416643).[2] [3]
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Gene duplication is a major source of plant chemical diversity that mediates plant-herbivore interactions. There is little direct evidence, however, that novel chemical traits arising from gene duplication reduce herbivory. Higher plants use threonine deaminase (TD) to catalyze the dehydration of threonine (Thr) to alpha-ketobutyrate and ammonia as the committed step in the biosynthesis of isoleucine (Ile). Cultivated tomato and related Solanum species contain a duplicated TD paralog (TD2) that is coexpressed with a suite of genes involved in herbivore resistance. Analysis of TD2-deficient tomato lines showed that TD2 has a defensive function related to Thr catabolism in the gut of lepidopteran herbivores. During herbivory, the regulatory domain of TD2 is removed by proteolysis to generate a truncated protein (pTD2) that efficiently degrades Thr without being inhibited by Ile. We show that this proteolytic activation step occurs in the gut of lepidopteran but not coleopteran herbivores, and is catalyzed by a chymotrypsin-like protease of insect origin. Analysis of purified recombinant enzymes showed that TD2 is remarkably more resistant to proteolysis and high temperature than the ancestral TD1 isoform. The crystal structure of pTD2 provided evidence that electrostatic interactions constitute a stabilizing feature associated with adaptation of TD2 to the extreme environment of the lepidopteran gut. These findings demonstrate a role for gene duplication in the evolution of a plant defense that targets and co-opts herbivore digestive physiology.
Adaptive evolution of threonine deaminase in plant defense against insect herbivores.,Gonzales-Vigil E, Bianchetti CM, Phillips GN Jr, Howe GA Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5897-902. Epub 2011 Mar 21. PMID:21436043[4]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Gonzales-Vigil E, Bianchetti CM, Phillips GN Jr, Howe GA. Adaptive evolution of threonine deaminase in plant defense against insect herbivores. Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5897-902. Epub 2011 Mar 21. PMID:21436043 doi:10.1073/pnas.1016157108
- ↑ Chen H, Gonzales-Vigil E, Wilkerson CG, Howe GA. Stability of plant defense proteins in the gut of insect herbivores. Plant Physiol. 2007 Apr;143(4):1954-67. PMID:17416643 doi:10.1104/pp.106.095588
- ↑ Gonzales-Vigil E, Bianchetti CM, Phillips GN Jr, Howe GA. Adaptive evolution of threonine deaminase in plant defense against insect herbivores. Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5897-902. Epub 2011 Mar 21. PMID:21436043 doi:10.1073/pnas.1016157108
- ↑ Gonzales-Vigil E, Bianchetti CM, Phillips GN Jr, Howe GA. Adaptive evolution of threonine deaminase in plant defense against insect herbivores. Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5897-902. Epub 2011 Mar 21. PMID:21436043 doi:10.1073/pnas.1016157108
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