7v9p

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==Crystal structure of the lanthipeptide zinc-metallopeptidase EryP from saccharopolyspora erythraea in intermediate state==
==Crystal structure of the lanthipeptide zinc-metallopeptidase EryP from saccharopolyspora erythraea in intermediate state==
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<StructureSection load='7v9p' size='340' side='right'caption='[[7v9p]]' scene=''>
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<StructureSection load='7v9p' size='340' side='right'caption='[[7v9p]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7V9P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7V9P FirstGlance]. <br>
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<table><tr><td colspan='2'>[[7v9p]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7V9P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7V9P FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7v9p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7v9p OCA], [https://pdbe.org/7v9p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7v9p RCSB], [https://www.ebi.ac.uk/pdbsum/7v9p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7v9p ProSAT]</span></td></tr>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Membrane_alanyl_aminopeptidase Membrane alanyl aminopeptidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.11.2 3.4.11.2] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7v9p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7v9p OCA], [https://pdbe.org/7v9p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7v9p RCSB], [https://www.ebi.ac.uk/pdbsum/7v9p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7v9p ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Lanthipeptides are an important group of natural products with diverse biological functions, and their biosynthesis requires the removal of N-terminal leader peptides (LPs) by designated proteases. LanPM1 enzymes, a subgroup of M1 zinc-metallopeptidases, have been recently identified as bifunctional proteases with both endo- and aminopeptidase activities to remove LPs of class III and class IV lanthipeptides. Herein, we report the biochemical and structural characterization of EryP as the LanPM1 enzyme from the biosynthesis of class III lanthipeptide erythreapeptin. We determined X-ray crystal structures of EryP in three conformational states, the open, intermediate and closed states, and identified a unique interdomain Ca(2+) binding site as a regulatory element that modulates its domain dynamics and proteolytic activity. Inspired by this regulatory Ca(2+) binding, we developed a strategy to engineer LanPM1 enzymes for enhanced catalytic activities by strengthening interdomain associations and driving the conformational equilibrium toward their closed forms.
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Conformational remodeling enhances activity of lanthipeptide zinc-metallopeptidases.,Zhao C, Sheng W, Wang Y, Zheng J, Xie X, Liang Y, Wei W, Bao R, Wang H Nat Chem Biol. 2022 May 5. pii: 10.1038/s41589-022-01018-2. doi:, 10.1038/s41589-022-01018-2. PMID:35513512<ref>PMID:35513512</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 7v9p" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Bao R]]
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[[Category: Membrane alanyl aminopeptidase]]
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[[Category: Zhao C]]
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[[Category: Bao, R]]
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[[Category: Zhao NL]]
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[[Category: Zhao, C]]
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[[Category: Zhao, N L]]
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[[Category: Alanine aminopeptidase]]
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[[Category: Aminopeptidase]]
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[[Category: Cytosolic protein]]
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[[Category: Hydrolase]]

Revision as of 08:18, 25 May 2022

Crystal structure of the lanthipeptide zinc-metallopeptidase EryP from saccharopolyspora erythraea in intermediate state

PDB ID 7v9p

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