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3n8d

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Current revision (09:10, 6 September 2023) (edit) (undo)
 
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<StructureSection load='3n8d' size='340' side='right'caption='[[3n8d]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
<StructureSection load='3n8d' size='340' side='right'caption='[[3n8d]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3n8d]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"micrococcus_aureus"_(rosenbach_1884)_zopf_1885 "micrococcus aureus" (rosenbach 1884) zopf 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N8D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3N8D FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3n8d]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N8D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3N8D FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2i87|2i87]], [[2i80|2i80]], [[2i8c|2i8c]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ddl ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 "Micrococcus aureus" (Rosenbach 1884) Zopf 1885])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/D-alanine--D-alanine_ligase D-alanine--D-alanine ligase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.4 6.3.2.4] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3n8d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n8d OCA], [https://pdbe.org/3n8d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3n8d RCSB], [https://www.ebi.ac.uk/pdbsum/3n8d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3n8d ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3n8d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n8d OCA], [https://pdbe.org/3n8d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3n8d RCSB], [https://www.ebi.ac.uk/pdbsum/3n8d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3n8d ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/DDL_STAAC DDL_STAAC]] Cell wall formation (By similarity).
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[https://www.uniprot.org/uniprot/DDL_STAAC DDL_STAAC] Cell wall formation (By similarity).
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: D-alanine--D-alanine ligase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Haouz, A]]
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[[Category: Staphylococcus aureus]]
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[[Category: Meziane-Cherif, D]]
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[[Category: Haouz A]]
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[[Category: Saul, F A]]
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[[Category: Meziane-Cherif D]]
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[[Category: Cell wall synthesis]]
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[[Category: Saul FA]]
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[[Category: D-ala:d-ala ligase]]
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[[Category: Ligase]]
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[[Category: Vancomycin dependence]]
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Current revision

Crystal structure of Staphylococcus aureus VRSA-9 D-Ala:D-Ala ligase

PDB ID 3n8d

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