This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ndc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:45, 1 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3ndc' size='340' side='right'caption='[[3ndc]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='3ndc' size='340' side='right'caption='[[3ndc]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3ndc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhocb Rhocb]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NDC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NDC FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3ndc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodobacter_capsulatus_SB_1003 Rhodobacter capsulatus SB 1003]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NDC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NDC FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3nei|3nei]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cobM ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272942 RHOCB])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Precorrin-4_C(11)-methyltransferase Precorrin-4 C(11)-methyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.133 2.1.1.133] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ndc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ndc OCA], [https://pdbe.org/3ndc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ndc RCSB], [https://www.ebi.ac.uk/pdbsum/3ndc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ndc ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ndc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ndc OCA], [https://pdbe.org/3ndc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ndc RCSB], [https://www.ebi.ac.uk/pdbsum/3ndc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ndc ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/COBM_RHOCB COBM_RHOCB]] Catalyzes the methylation of C-11 in precorrin-4 to form precorrin-5.
+
[https://www.uniprot.org/uniprot/COBM_RHOCB COBM_RHOCB] Catalyzes the methylation of C-11 in precorrin-4 to form precorrin-5.
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Rhocb]]
+
[[Category: Rhodobacter capsulatus SB 1003]]
-
[[Category: Pickersgill, R W]]
+
[[Category: Pickersgill RW]]
-
[[Category: Seyedarabi, A]]
+
[[Category: Seyedarabi A]]
-
[[Category: Methyltransferase]]
+
-
[[Category: Sah]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of Precorrin-4 C11-methyltransferase from Rhodobacter capsulatus

PDB ID 3ndc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools