3nwm

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<StructureSection load='3nwm' size='340' side='right'caption='[[3nwm]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
<StructureSection load='3nwm' size='340' side='right'caption='[[3nwm]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3nwm]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NWM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NWM FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3nwm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NWM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NWM FirstGlance]. <br>
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</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1vgk|1vgk]]</div></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3nwm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nwm OCA], [https://pdbe.org/3nwm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3nwm RCSB], [https://www.ebi.ac.uk/pdbsum/3nwm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3nwm ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3nwm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nwm OCA], [https://pdbe.org/3nwm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3nwm RCSB], [https://www.ebi.ac.uk/pdbsum/3nwm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3nwm ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Function ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/B2MG_MOUSE B2MG_MOUSE] Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.[https://www.uniprot.org/uniprot/HA1D_MOUSE HA1D_MOUSE] Involved in the presentation of foreign antigens to the immune system.
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Peptide-MHC (pMHC) multimers, in addition to being tools for tracking and quantifying antigen-specific T cells, can mediate downstream signaling after T-cell receptor engagement. In the absence of costimulation, this can lead to anergy or apoptosis of cognate T cells, a property that could be exploited in the setting of autoimmune disease. Most studies with class I pMHC multimers used noncovalently linked peptides, which can allow unwanted CD8(+) T-cell activation as a result of peptide transfer to cellular MHC molecules. To circumvent this problem, and given the role of self-reactive CD8(+) T cells in the development of type 1 diabetes, we designed a single-chain pMHC complex (scK(d).IGRP) by using the class I MHC molecule H-2K(d) and a covalently linked peptide derived from islet-specific glucose-6-phosphatase catalytic subunit-related protein (IGRP(206-214)), a well established autoantigen in NOD mice. X-ray diffraction studies revealed that the peptide is presented in the groove of the MHC molecule in canonical fashion, and it was also demonstrated that scK(d).IGRP tetramers bound specifically to cognate CD8(+) T cells. Tetramer binding induced death of naive T cells and in vitro- and in vivo-differentiated cytotoxic T lymphocytes, and tetramer-treated cytotoxic T lymphocytes showed a diminished IFN-gamma response to antigen stimulation. Tetramer accessibility to disease-relevant T cells in vivo was also demonstrated. Our study suggests the potential of single-chain pMHC tetramers as possible therapeutic agents in autoimmune disease. Their ability to affect the fate of naive and activated CD8(+) T cells makes them a potential intervention strategy in early and late stages of disease.
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Structural and functional characterization of a single-chain peptide-MHC molecule that modulates both naive and activated CD8+ T cells.,Samanta D, Mukherjee G, Ramagopal UA, Chaparro RJ, Nathenson SG, DiLorenzo TP, Almo SC Proc Natl Acad Sci U S A. 2011 Aug 16;108(33):13682-7. Epub 2011 Aug 8. PMID:21825122<ref>PMID:21825122</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3nwm" style="background-color:#fffaf0;"></div>
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==See Also==
==See Also==
*[[Beta-2 microglobulin 3D structures|Beta-2 microglobulin 3D structures]]
*[[Beta-2 microglobulin 3D structures|Beta-2 microglobulin 3D structures]]
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Almo, S C]]
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[[Category: Mus musculus]]
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[[Category: Nathenson, S G]]
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[[Category: Almo SC]]
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[[Category: Ramagopal, U A]]
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[[Category: Nathenson SG]]
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[[Category: Samanta, D]]
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[[Category: Ramagopal UA]]
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[[Category: H-2kd]]
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[[Category: Samanta D]]
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[[Category: Immune system]]
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[[Category: Immunoglobulin fold]]
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[[Category: Mhc class i]]
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[[Category: Peptide-mhc complex]]
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Revision as of 10:01, 14 February 2024

Crystal structure of a single chain construct composed of MHC class I H-2Kd, beta-2microglobulin and a peptide which is an autoantigen for type 1 diabetes

PDB ID 3nwm

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OCA

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