7uwt
From Proteopedia
(Difference between revisions)
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==Structure of Oxygen-Insensitive NAD(P)H-dependent Nitroreductase NfsB_Vv F70A/F108Y (NTR 2.0) in complex with FMN at 1.85 Angstroms resolution== | ==Structure of Oxygen-Insensitive NAD(P)H-dependent Nitroreductase NfsB_Vv F70A/F108Y (NTR 2.0) in complex with FMN at 1.85 Angstroms resolution== | ||
| - | <StructureSection load='7uwt' size='340' side='right'caption='[[7uwt]]' scene=''> | + | <StructureSection load='7uwt' size='340' side='right'caption='[[7uwt]], [[Resolution|resolution]] 1.85Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7UWT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7UWT FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7uwt]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_vulnificus Vibrio vulnificus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7UWT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7UWT FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7uwt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7uwt OCA], [https://pdbe.org/7uwt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7uwt RCSB], [https://www.ebi.ac.uk/pdbsum/7uwt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7uwt ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=P4K:polyethylene+glycol'>P4K</scene></td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7uwt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7uwt OCA], [https://pdbe.org/7uwt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7uwt RCSB], [https://www.ebi.ac.uk/pdbsum/7uwt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7uwt ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q7MCD2_VIBVY Q7MCD2_VIBVY] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Bacterial nitroreductase enzymes that convert prodrugs to cytotoxins are valuable tools for creating transgenic targeted ablation models to study cellular function and cell-specific regeneration paradigms. We recently engineered a nitroreductase ("NTR 2.0") for substantially enhanced reduction of the prodrug metronidazole, which permits faster cell ablation kinetics, cleaner interrogations of cell function, ablation of previously recalcitrant cell types, and extended ablation paradigms useful for modelling chronic diseases. To provide insight into the enhanced enzymatic mechanism of NTR 2.0, we have solved the X-ray crystal structure at 1.85 Angstroms resolution and compared it to the parental enzyme, NfsB from Vibrio vulnificus. We additionally present a survey of reductive activity with eight alternative nitroaromatic substrates, to provide access to alternative ablation prodrugs, and explore applications such as remediation of dinitrotoluene pollutants. The predicted binding modes of four key substrates were investigated using molecular modelling. | ||
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| + | The Crystal Structure of Engineered Nitroreductase NTR 2.0 and Impact of F70A and F108Y Substitutions on Substrate Specificity.,Sharrock AV, Mumm JS, Bagdziunas G, Cenas N, Arcus VL, Ackerley DF Int J Mol Sci. 2023 Apr 1;24(7):6633. doi: 10.3390/ijms24076633. PMID:37047605<ref>PMID:37047605</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 7uwt" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| + | [[Category: Vibrio vulnificus]] | ||
[[Category: Ackerley DF]] | [[Category: Ackerley DF]] | ||
[[Category: Arcus V]] | [[Category: Arcus V]] | ||
[[Category: Mumm JS]] | [[Category: Mumm JS]] | ||
[[Category: Sharrock AV]] | [[Category: Sharrock AV]] | ||
Revision as of 17:11, 26 April 2023
Structure of Oxygen-Insensitive NAD(P)H-dependent Nitroreductase NfsB_Vv F70A/F108Y (NTR 2.0) in complex with FMN at 1.85 Angstroms resolution
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