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| <StructureSection load='3p83' size='340' side='right'caption='[[3p83]], [[Resolution|resolution]] 3.05Å' scene=''> | | <StructureSection load='3p83' size='340' side='right'caption='[[3p83]], [[Resolution|resolution]] 3.05Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[3p83]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Arcfl Arcfl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3P83 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3P83 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3p83]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3P83 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3P83 FirstGlance]. <br> |
- | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1i39|1i39]], [[1rxm|1rxm]]</div></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.05Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pcn, AF_0335 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2234 ARCFL]), AF_0621, rnhB ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2234 ARCFL])</td></tr>
| + | |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Ribonuclease_H Ribonuclease H], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.26.4 3.1.26.4] </span></td></tr>
| + | |
| <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3p83 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3p83 OCA], [https://pdbe.org/3p83 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3p83 RCSB], [https://www.ebi.ac.uk/pdbsum/3p83 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3p83 ProSAT]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3p83 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3p83 OCA], [https://pdbe.org/3p83 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3p83 RCSB], [https://www.ebi.ac.uk/pdbsum/3p83 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3p83 ProSAT]</span></td></tr> |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[https://www.uniprot.org/uniprot/PCNA_ARCFU PCNA_ARCFU]] Sliding clamp subunit. Responsible for tethering the catalytic subunit of DNA polymerase to DNA during high-speed replication (By similarity). [[https://www.uniprot.org/uniprot/RNH2_ARCFU RNH2_ARCFU]] Endonuclease that specifically degrades the RNA of RNA-DNA hybrids (By similarity).[HAMAP-Rule:MF_00052_A]
| + | [https://www.uniprot.org/uniprot/PCNA_ARCFU PCNA_ARCFU] Sliding clamp subunit. Responsible for tethering the catalytic subunit of DNA polymerase to DNA during high-speed replication (By similarity). |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Arcfl]] | + | [[Category: Archaeoglobus fulgidus]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Ribonuclease H]]
| + | [[Category: Astell KR]] |
- | [[Category: Astell, K R]] | + | [[Category: Bubeck D]] |
- | [[Category: Bubeck, D]] | + | [[Category: Graham SC]] |
- | [[Category: Graham, S C]] | + | [[Category: Jackson AP]] |
- | [[Category: Jackson, A P]] | + | [[Category: Jones EY]] |
- | [[Category: Jones, E Y]] | + | [[Category: Reijns MA]] |
- | [[Category: Reijns, M A]] | + | |
- | [[Category: Cleaves rna/dna hybrid]]
| + | |
- | [[Category: Dna clamp]]
| + | |
- | [[Category: Hydrolase-dna binding protein complex]]
| + | |
- | [[Category: Nucleus]]
| + | |
- | [[Category: Rnase h fold]]
| + | |
| Structural highlights
Function
PCNA_ARCFU Sliding clamp subunit. Responsible for tethering the catalytic subunit of DNA polymerase to DNA during high-speed replication (By similarity).
Publication Abstract from PubMed
Ribonuclease H2 is the major nuclear enzyme degrading cellular RNA/DNA hybrids in eukaryotes and the sole nuclease known to be able to hydrolyze ribonucleotides misincorporated during genomic replication. Mutation in RNASEH2 causes Aicardi-Goutieres syndrome, an auto-inflammatory disorder that may arise from nucleic acid byproducts generated during DNA replication. Here, we report the crystal structures of Archaeoglobus fulgidus RNase HII in complex with PCNA, and human PCNA bound to a C-terminal peptide of RNASEH2B. In the archaeal structure, three binding modes are observed as the enzyme rotates about a flexible hinge while anchored to PCNA by its PIP-box motif. PCNA binding promotes RNase HII activity in a hinge-dependent manner. It enhances both cleavage of ribonucleotides misincorporated in DNA duplexes, and the comprehensive hydrolysis of RNA primers formed during Okazaki fragment maturation. In addition, PCNA imposes strand specificity on enzyme function, and by localizing RNase H2 and not RNase H1 to nuclear replication foci in vivo it ensures that RNase H2 is the dominant RNase H activity during nuclear replication. Our findings provide insights into how type 2 RNase H activity is directed during genome replication and repair, and suggest a mechanism by which RNase H2 may suppress generation of immunostimulatory nucleic acids.
PCNA directs type 2 RNase H activity on DNA replication and repair substrates.,Bubeck D, Reijns MA, Graham SC, Astell KR, Jones EY, Jackson AP Nucleic Acids Res. 2011 Jan 17. PMID:21245041[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Bubeck D, Reijns MA, Graham SC, Astell KR, Jones EY, Jackson AP. PCNA directs type 2 RNase H activity on DNA replication and repair substrates. Nucleic Acids Res. 2011 Jan 17. PMID:21245041 doi:10.1093/nar/gkq980
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