7r2g
From Proteopedia
(Difference between revisions)
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==USP15 D1D2 in catalytically-competent state bound to mitoxantrone stack (isoform 2)== | ==USP15 D1D2 in catalytically-competent state bound to mitoxantrone stack (isoform 2)== | ||
- | <StructureSection load='7r2g' size='340' side='right'caption='[[7r2g]]' scene=''> | + | <StructureSection load='7r2g' size='340' side='right'caption='[[7r2g]], [[Resolution|resolution]] 1.98Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7R2G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7R2G FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7r2g]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7R2G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7R2G FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7r2g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7r2g OCA], [https://pdbe.org/7r2g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7r2g RCSB], [https://www.ebi.ac.uk/pdbsum/7r2g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7r2g ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MIX:1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL)AMINO]ETHYL}AMINO)-9,10-ANTHRACENEDIONE'>MIX</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Ubiquitinyl_hydrolase_1 Ubiquitinyl hydrolase 1], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.19.12 3.4.19.12] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7r2g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7r2g OCA], [https://pdbe.org/7r2g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7r2g RCSB], [https://www.ebi.ac.uk/pdbsum/7r2g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7r2g ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Ubiquitin specific protease USP15 is a deubiquitinating enzyme reported to regulate several biological and cellular processes, including TGF-beta signaling, regulation of immune response, neuro-inflammation and mRNA splicing. Here we study the USP15 D1D2 catalytic domain and present the crystal structure in its catalytically-competent conformation. We compare this apo-structure to a previous misaligned state in the same crystal lattice. In both structures, mitoxantrone, an FDA approved antineoplastic drug and a weak inhibitor of USP15 is bound, indicating that it is not responsible for inducing a switch in the conformation of active site cysteine in the USP15 D1D2 structure. Instead, mitoxantrone contributes to crystal packing, by forming a stack of 12 mitoxantrone molecules. We believe this reflects how mitoxantrone can be responsible for e.g. nuclear condensate partitioning. We conclude that USP15 can switch between active and inactive states in the absence of ubiquitin, and that this is independent of mitoxantrone binding. These insights can be important for future drug discovery targeting USP15. | ||
+ | |||
+ | Mitoxantrone stacking does not define the active or inactive state of USP15 catalytic domain.,Priyanka A, Tisi D, Sixma TK J Struct Biol. 2022 May 20;214(3):107862. doi: 10.1016/j.jsb.2022.107862. PMID:35605756<ref>PMID:35605756</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7r2g" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Priyanka A]] | + | [[Category: Ubiquitinyl hydrolase 1]] |
- | [[Category: Sixma | + | [[Category: Priyanka, A]] |
+ | [[Category: Sixma, T K]] | ||
+ | [[Category: Cysteine protease]] | ||
+ | [[Category: Hydrolase]] |
Revision as of 05:20, 15 June 2022
USP15 D1D2 in catalytically-competent state bound to mitoxantrone stack (isoform 2)
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