This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3qgz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:45, 14 March 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3qgz' size='340' side='right'caption='[[3qgz]], [[Resolution|resolution]] 1.10&Aring;' scene=''>
<StructureSection load='3qgz' size='340' side='right'caption='[[3qgz]], [[Resolution|resolution]] 1.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3qgz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/European_rabbit European rabbit]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3llj 3llj]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QGZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QGZ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3qgz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3llj 3llj]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QGZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QGZ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADN:ADENOSINE'>ADN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.1&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3llj|3llj]], [[1rzy|1rzy]], [[3rhn|3rhn]], [[4rhn|4rhn]], [[5rhn|5rhn]], [[6rhn|6rhn]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADN:ADENOSINE'>ADN</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HINT1, HINT ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9986 European rabbit])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qgz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qgz OCA], [https://pdbe.org/3qgz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qgz RCSB], [https://www.ebi.ac.uk/pdbsum/3qgz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qgz ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qgz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qgz OCA], [https://pdbe.org/3qgz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qgz RCSB], [https://www.ebi.ac.uk/pdbsum/3qgz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qgz ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/HINT1_RABIT HINT1_RABIT]] Hydrolyzes adenosine 5'-monophosphoramidate substrates such as AMP-morpholidate, AMP-N-alanine methyl ester, AMP-alpha-acetyl lysine methyl ester and AMP-NH2.
+
[https://www.uniprot.org/uniprot/HINT1_RABIT HINT1_RABIT] Hydrolyzes adenosine 5'-monophosphoramidate substrates such as AMP-morpholidate, AMP-N-alanine methyl ester, AMP-alpha-acetyl lysine methyl ester and AMP-NH2.
-
<div style="background-color:#fffaf0;">
+
-
== Publication Abstract from PubMed ==
+
-
Histidine triad nucleotide-binding protein 1 (HINT1) represents the most ancient and widespread branch in the histidine-triad protein superfamily. HINT1 plays an important role in various biological processes and has been found in many species. Here, the first complete structure of the rabbit HINT1-adenosine complex is reported at 1.10 A resolution, which is one of the highest resolutions obtained for a HINT1 structure. The final structure has an R(cryst) of 14.25% (R(free) = 16.77%) and the model exhibits good stereochemical qualities. A detailed analysis of the atomic resolution data allowed an update of the details of the protein structure in comparison to previously published data.
+
-
 
+
-
High-resolution X-ray structure of the rabbit histidine triad nucleotide-binding protein 1 (rHINT1)-adenosine complex at 1.10 A resolution.,Dolot R, Ozga M, Krakowiak A, Nawrot B Acta Crystallogr D Biol Crystallogr. 2011 Jul;67(Pt 7):601-7. doi:, 10.1107/S0907444911015605. Epub 2011 Jun 14. PMID:21697598<ref>PMID:21697598</ref>
+
-
 
+
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
<div class="pdbe-citations 3qgz" style="background-color:#fffaf0;"></div>
+
==See Also==
==See Also==
*[[Histidine triad nucleotide-binding protein 3D structures|Histidine triad nucleotide-binding protein 3D structures]]
*[[Histidine triad nucleotide-binding protein 3D structures|Histidine triad nucleotide-binding protein 3D structures]]
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: European rabbit]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Dolot, R M]]
+
[[Category: Oryctolagus cuniculus]]
-
[[Category: Krakowiak, A]]
+
[[Category: Dolot RM]]
-
[[Category: Nawrot, B]]
+
[[Category: Krakowiak A]]
-
[[Category: Ozga, M]]
+
[[Category: Nawrot B]]
-
[[Category: Stec, W J]]
+
[[Category: Ozga M]]
-
[[Category: Adenosine 5'-monophosphoramidase]]
+
[[Category: Stec WJ]]
-
[[Category: Hint protein]]
+
-
[[Category: Hit family protein]]
+
-
[[Category: Hydrolase]]
+

Current revision

Re-investigated high resolution crystal structure of histidine triad nucleotide-binding protein 1 (HINT1) from rabbit complexed with adenosine

PDB ID 3qgz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools