This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


7x8j

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:49, 29 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='7x8j' size='340' side='right'caption='[[7x8j]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
<StructureSection load='7x8j' size='340' side='right'caption='[[7x8j]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[7x8j]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7X8J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7X8J FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[7x8j]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7X8J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7X8J FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.798&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Mannose-1-phosphate_guanylyltransferase Mannose-1-phosphate guanylyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.13 2.7.7.13] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7x8j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7x8j OCA], [https://pdbe.org/7x8j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7x8j RCSB], [https://www.ebi.ac.uk/pdbsum/7x8j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7x8j ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7x8j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7x8j OCA], [https://pdbe.org/7x8j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7x8j RCSB], [https://www.ebi.ac.uk/pdbsum/7x8j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7x8j ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/GMPP1_ARATH GMPP1_ARATH]] Essential protein during embryogenesis (PubMed:15266054). Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. Plays an essential role in plant growth and development and cell-wall architecture. Provides GDP-mannose, used for cell wall carbohydrate biosynthesis, protein N-glycosylation, as well as for the biosynthesis of the antioxidant ascorbate.<ref>PMID:10097187</ref> <ref>PMID:10655235</ref> <ref>PMID:11226227</ref> <ref>PMID:12671089</ref> <ref>PMID:15064386</ref> <ref>PMID:15266054</ref> <ref>PMID:16244149</ref> <ref>PMID:16720601</ref> <ref>PMID:18849295</ref> <ref>PMID:19011088</ref> <ref>PMID:8790441</ref> <ref>PMID:9390448</ref>
+
[https://www.uniprot.org/uniprot/GMPP1_ARATH GMPP1_ARATH] Essential protein during embryogenesis (PubMed:15266054). Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. Plays an essential role in plant growth and development and cell-wall architecture. Provides GDP-mannose, used for cell wall carbohydrate biosynthesis, protein N-glycosylation, as well as for the biosynthesis of the antioxidant ascorbate.<ref>PMID:10097187</ref> <ref>PMID:10655235</ref> <ref>PMID:11226227</ref> <ref>PMID:12671089</ref> <ref>PMID:15064386</ref> <ref>PMID:15266054</ref> <ref>PMID:16244149</ref> <ref>PMID:16720601</ref> <ref>PMID:18849295</ref> <ref>PMID:19011088</ref> <ref>PMID:8790441</ref> <ref>PMID:9390448</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 23: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Large Structures]]
 
-
[[Category: Mannose-1-phosphate guanylyltransferase]]
 
-
[[Category: Liu, L]]
 
-
[[Category: Zhang, C]]
 
-
[[Category: Zhao, S]]
 
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
-
[[Category: Ascorbic acid]]
+
[[Category: Large Structures]]
-
[[Category: Guanylyltransferase]]
+
[[Category: Liu L]]
-
[[Category: Nucleotide sugar]]
+
[[Category: Zhang C]]
-
[[Category: Transferase]]
+
[[Category: Zhao S]]

Current revision

Arabidopsis GDP-D-mannose pyrophosphorylase (VTC1) structure (unliganded)

PDB ID 7x8j

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/7x8j"
Personal tools