7qv5
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Amyloid fibril from the antimicrobial peptide uperin 3.5== | ==Amyloid fibril from the antimicrobial peptide uperin 3.5== | ||
| - | <StructureSection load='7qv5' size='340' side='right'caption='[[7qv5]]' scene=''> | + | <StructureSection load='7qv5' size='340' side='right'caption='[[7qv5]], [[Resolution|resolution]] 3.00Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7QV5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7QV5 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7qv5]] is a 27 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7QV5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7QV5 FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7qv5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7qv5 OCA], [https://pdbe.org/7qv5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7qv5 RCSB], [https://www.ebi.ac.uk/pdbsum/7qv5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7qv5 ProSAT]</span></td></tr> | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7qv5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7qv5 OCA], [https://pdbe.org/7qv5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7qv5 RCSB], [https://www.ebi.ac.uk/pdbsum/7qv5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7qv5 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The amyloid-antimicrobial link hypothesis is based on antimicrobial properties found in human amyloids involved in neurodegenerative and systemic diseases, along with amyloidal structural properties found in antimicrobial peptides (AMPs). Supporting this hypothesis, we here determined the fibril structure of two AMPs from amphibians, uperin 3.5 and aurein 3.3, by cryogenic electron microscopy (cryo-EM), revealing amyloid cross-beta fibrils of mated beta-sheets at atomic resolution. Uperin 3.5 formed a 3-blade symmetrical propeller of nine peptides per fibril layer including tight beta-sheet interfaces. This cross-beta cryo-EM structure complements the cross-alpha fibril conformation previously determined by crystallography, substantiating a secondary structure switch mechanism of uperin 3.5. The aurein 3.3 arrangement consisted of six peptides per fibril layer, all showing kinked beta-sheets allowing a rounded compactness of the fibril. The kinked beta-sheets are similar to LARKS (Low-complexity, Amyloid-like, Reversible, Kinked Segments) found in human functional amyloids. | ||
| + | |||
| + | The Cryo-EM structures of two amphibian antimicrobial cross-beta amyloid fibrils.,Bucker R, Seuring C, Cazey C, Veith K, Garcia-Alai M, Grunewald K, Landau M Nat Commun. 2022 Jul 27;13(1):4356. doi: 10.1038/s41467-022-32039-z. PMID:35896552<ref>PMID:35896552</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 7qv5" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Buecker, R | + | [[Category: Buecker, R]] |
| + | [[Category: Cazey, C]] | ||
| + | [[Category: Garcia-Alai, M]] | ||
| + | [[Category: Gruenewald, K]] | ||
| + | [[Category: Landau, M]] | ||
| + | [[Category: Seuring, C]] | ||
| + | [[Category: Veith, K]] | ||
| + | [[Category: Amyloid]] | ||
| + | [[Category: Antimicrobial peptide]] | ||
| + | [[Category: Cross-beta]] | ||
| + | [[Category: Filament]] | ||
| + | [[Category: Protein fibril]] | ||
Revision as of 05:09, 10 August 2022
Amyloid fibril from the antimicrobial peptide uperin 3.5
| |||||||||||
