3tik

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Current revision (13:29, 14 March 2024) (edit) (undo)
 
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<StructureSection load='3tik' size='340' side='right'caption='[[3tik]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
<StructureSection load='3tik' size='340' side='right'caption='[[3tik]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3tik]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_(trypanozoon)_brucei Trypanosoma (trypanozoon) brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TIK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3TIK FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3tik]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_brucei Trypanosoma brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TIK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3TIK FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=JKF:6-[(R)-(4-CHLOROPHENYL)(METHOXY)(1-METHYL-1H-IMIDAZOL-5-YL)METHYL]-4-(2,6-DIFLUOROPHENYL)-1-METHYLQUINOLIN-2(1H)-ONE'>JKF</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3g1q|3g1q]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=JKF:6-[(R)-(4-CHLOROPHENYL)(METHOXY)(1-METHYL-1H-IMIDAZOL-5-YL)METHYL]-4-(2,6-DIFLUOROPHENYL)-1-METHYLQUINOLIN-2(1H)-ONE'>JKF</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CYP51, Tb11.02.4080 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5691 Trypanosoma (Trypanozoon) brucei])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Sterol_14-demethylase Sterol 14-demethylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.14.13.70 1.14.13.70] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3tik FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3tik OCA], [https://pdbe.org/3tik PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3tik RCSB], [https://www.ebi.ac.uk/pdbsum/3tik PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3tik ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3tik FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3tik OCA], [https://pdbe.org/3tik PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3tik RCSB], [https://www.ebi.ac.uk/pdbsum/3tik PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3tik ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Function ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/Q385E8_TRYB2 Q385E8_TRYB2]
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Chagas disease caused by the protozoan pathogen Trypanosoma cruzi remains a challenging infection due to the unavailability of safe and efficacious drugs. Inhibitors of the trypanosome sterol 14alpha-demethylase enzyme (CYP51), including azole antifungal drugs, are promising candidates for development as anti-Chagas drugs. Posaconazole is under clinical investigation for Chagas disease although the high cost of this drug may limit its widespread use. We have previously reported that the human protein farnesyltransferase (PFT) inhibitor, tipifarnib, has potent anti-T. cruzi activity by inhibiting the CYP51 enzyme. Furthermore, we have developed analogs that minimize the PFT inhibitory activity and enhance the CYP51 inhibition. In this paper, we describe the efficacy of the lead tipifarnib analog compared to posaconazole in a murine model of T. cruzi infection. The plasma exposure profiles for each compound following a single oral dose in mice and estimated exposure parameters after repeated twice-daily dosing for 20 days are also presented. The lead tipifarnib analog had potent suppressive activity on parasitemia in mice, but was unsuccessful at curing mice, whereas posaconazole as well as benznidazole cured 3 of 5 and 4 of 6 mice, respectively. The efficacy results are consistent with posaconazole having substantially higher predicted exposure than the tipifarnib analog after repeat twice daily administration. Further changes to the tipifarnib analogs to reduce plasma clearance are therefore likely to be important. A crystal structure of a trypanosomal CYP51 bound to a tipifarnib analog is reported herein, and provides new insights to guide structure-based drug design for further optimized compounds.
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Pharmacological Characterization, Structural studies, and In Vivo Activity of Anti-Chagas Disease Lead Compounds Derived from Tipifarnib.,Buckner FS, Bahia MT, Suryadevara PK, White KL, Shackleford DM, Chennamaneni NK, Hulverson MA, Laydbak JU, Chatelain E, Scandale I, Verlinde CL, Charman SA, Lepesheva GI, Gelb MH Antimicrob Agents Chemother. 2012 Jul 9. PMID:22777048<ref>PMID:22777048</ref>
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==See Also==
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*[[Cytochrome P450 3D structures|Cytochrome P450 3D structures]]
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3tik" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Sterol 14-demethylase]]
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[[Category: Trypanosoma brucei]]
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[[Category: Buckner, F S]]
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[[Category: Buckner FS]]
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[[Category: Gelb, M H]]
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[[Category: Gelb MH]]
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[[Category: Hargrove, T Y]]
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[[Category: Hargrove TY]]
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[[Category: Kraus, J M]]
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[[Category: Kraus JM]]
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[[Category: Lepesheva, G I]]
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[[Category: Lepesheva GI]]
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[[Category: Waterman, M R]]
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[[Category: Waterman MR]]
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[[Category: Wawrzak, Z]]
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[[Category: Wawrzak Z]]
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[[Category: Cyp51]]
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[[Category: Cytochrome p450 fold]]
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[[Category: Cytochrome p450 reductase]]
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[[Category: Endoplasmic reticulum membrane]]
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[[Category: Heme]]
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[[Category: Monooxygenase]]
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[[Category: Oxidoreductase]]
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[[Category: Sterol 14-alpha demethylase]]
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[[Category: Sterol biosynthesis]]
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Current revision

Sterol 14-alpha demethylase (CYP51) from Trypanosoma brucei in complex with the tipifarnib derivative 6-((4-chlorophenyl)(methoxy)(1-methyl-1H-imidazol-5-yl)methyl)-4-(2,6-difluorophenyl)-1-methylquinolin-2(1H)-one

PDB ID 3tik

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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