This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ug0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:35, 1 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3ug0' size='340' side='right'caption='[[3ug0]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
<StructureSection load='3ug0' size='340' side='right'caption='[[3ug0]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3ug0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aeqvi Aeqvi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UG0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3UG0 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3ug0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UG0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3UG0 FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CRO</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.093&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3ufz|3ufz]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CRO</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GFP ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6100 AEQVI])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ug0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ug0 OCA], [https://pdbe.org/3ug0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ug0 RCSB], [https://www.ebi.ac.uk/pdbsum/3ug0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ug0 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ug0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ug0 OCA], [https://pdbe.org/3ug0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ug0 RCSB], [https://www.ebi.ac.uk/pdbsum/3ug0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ug0 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI]] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.
+
[https://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 27: Line 26:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Aeqvi]]
+
[[Category: Aequorea victoria]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Araiso, Y]]
+
[[Category: Araiso Y]]
-
[[Category: Kawahara-Kobayashi, A]]
+
[[Category: Kawahara-Kobayashi A]]
-
[[Category: Kiga, D]]
+
[[Category: Kiga D]]
-
[[Category: Kigawa, T]]
+
[[Category: Kigawa T]]
-
[[Category: Matsuda, T]]
+
[[Category: Matsuda T]]
-
[[Category: Nureki, O]]
+
[[Category: Nureki O]]
-
[[Category: Yokoyama, S]]
+
[[Category: Yokoyama S]]
-
[[Category: Fluorescent protein]]
+
-
[[Category: Green fluorescent protein]]
+

Current revision

Crystal structure of a Trp-less green fluorescent protein translated by the simplified genetic code

PDB ID 3ug0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3ug0"
Personal tools