7wdc
From Proteopedia
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==Crystal Structure of Cyanobacterial Circadian Clock Protein KaiC== | ==Crystal Structure of Cyanobacterial Circadian Clock Protein KaiC== | ||
- | <StructureSection load='7wdc' size='340' side='right'caption='[[7wdc]]' scene=''> | + | <StructureSection load='7wdc' size='340' side='right'caption='[[7wdc]], [[Resolution|resolution]] 2.84Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7WDC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7WDC FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7wdc]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7WDC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7WDC FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7wdc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7wdc OCA], [https://pdbe.org/7wdc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7wdc RCSB], [https://www.ebi.ac.uk/pdbsum/7wdc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7wdc ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Non-specific_serine/threonine_protein_kinase Non-specific serine/threonine protein kinase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.11.1 2.7.11.1] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7wdc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7wdc OCA], [https://pdbe.org/7wdc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7wdc RCSB], [https://www.ebi.ac.uk/pdbsum/7wdc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7wdc ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [[https://www.uniprot.org/uniprot/KAIC_SYNE7 KAIC_SYNE7]] Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction.<ref>PMID:9727980</ref> <ref>PMID:14709675</ref> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | KaiC, a core protein of the cyanobacterial circadian clock, consists of an N-terminal CI domain and a C-terminal CII domain, and assembles into a double-ring hexamer upon binding with ATP. KaiC rhythmically phosphorylates and dephosphorylates its own two adjacent residues Ser431 and Thr432 at the CII domain with a period of approximately 24 h through assembly and disassembly with the other clock proteins, KaiA and/or KaiB. In this study, to understand how KaiC alters its conformation as the source of circadian rhythm, we investigated structural changes of an inner-radius side of the CII ring using time-resolved Trp fluorescence spectroscopy. A KaiC mutant harboring a Trp fluorescence probe at a position of 419 exhibited a robust circadian rhythm with little temperature sensitivity in the presence of KaiA and KaiB. Our fluorescence observations show a remarkable environmental change at the inner-radius side of the CII ring during circadian oscillation. Crystallographic analysis revealed that a side chain of Trp at the position of 419 was oriented toward a region undergoing a helix-coil transition, which is considered to be a key event to allosterically regulate the CI ring that plays a crucial role in determining the cycle period. The present study provides a dynamical insight into how KaiC generates circadian oscillation. | ||
+ | |||
+ | Highly sensitive tryptophan fluorescence probe for detecting rhythmic conformational changes of KaiC in the cyanobacterial circadian clock system.,Mukaiyama A, Furuike Y, Yamashita E, Akiyama S Biochem J. 2022 Jul 29;479(14):1505-1515. doi: 10.1042/BCJ20210544. PMID:35771042<ref>PMID:35771042</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7wdc" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Akiyama S]] | + | [[Category: Non-specific serine/threonine protein kinase]] |
- | [[Category: Furuike Y]] | + | [[Category: Akiyama, S]] |
+ | [[Category: Furuike, Y]] | ||
+ | [[Category: Clock protein]] | ||
+ | [[Category: Transferase]] |
Revision as of 05:04, 3 August 2022
Crystal Structure of Cyanobacterial Circadian Clock Protein KaiC
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