7poh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='7poh' size='340' side='right'caption='[[7poh]], [[Resolution|resolution]] 2.85&Aring;' scene=''>
<StructureSection load='7poh' size='340' side='right'caption='[[7poh]], [[Resolution|resolution]] 2.85&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[7poh]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7POH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7POH FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[7poh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Drosophila_melanogaster Drosophila melanogaster]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7POH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7POH FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7poh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7poh OCA], [https://pdbe.org/7poh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7poh RCSB], [https://www.ebi.ac.uk/pdbsum/7poh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7poh ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7poh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7poh OCA], [https://pdbe.org/7poh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7poh RCSB], [https://www.ebi.ac.uk/pdbsum/7poh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7poh ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/SRYD_DROME SRYD_DROME]] Transcriptional activator that controls bicoid gene expression during oogenesis. Found in transcriptionally active cells. Binds to specific sites on polytene chromosomes of third instar larvae. Binds to the consensus DNA sequence 5'-YTAGAGATGGRAA-3'.<ref>PMID:9154812</ref> <ref>PMID:9858707</ref>
+
[[https://www.uniprot.org/uniprot/SRYD_DROME SRYD_DROME]] Transcriptional activator that controls bicoid gene expression during oogenesis. Found in transcriptionally active cells. Binds to specific sites on polytene chromosomes of third instar larvae. Binds to the consensus DNA sequence 5'-YTAGAGATGGRAA-3'.<ref>PMID:9154812</ref> <ref>PMID:9858707</ref>
-
<div style="background-color:#fffaf0;">
+
-
== Publication Abstract from PubMed ==
+
-
ZAD is a C4 zinc-coordinating domain often found at the N-terminus mostly of arthropodan transcription factors with multiple C2H2 zinc-finger domains involved in the regulation of chromosome architecture and promotor activity. ZADs predominantly form homodimers and have low primary sequence similarity. We obtained three crystal structures of the most phylogenetically distant Drosophila ZADs and structure of the only known ZAD-like domain from a mammalian protein (ZNF276). All ZAD structures demonstrate unity of the spatial fold as well as some unique structural features. The specific homodimerization of ZAD is primarily determined by the position and size of secondary structural elements and is further strengthened by a number of unique interactions between subunits. Structural comparison allowed for unraveling key sequence features underlying the similarity of the spatial fold. These features result in a broad variety of ZADs in Arthropod C2H2 proteins, allowing for the emergence of a wide range of highly specific homodimers.
+
-
 
+
-
Structural insights into highly similar spatial organization of zinc-finger associated domains with a very low sequence similarity.,Bonchuk AN, Boyko KM, Nikolaeva AY, Burtseva AD, Popov VO, Georgiev PG Structure. 2022 Jul 7;30(7):1004-1015.e4. doi: 10.1016/j.str.2022.04.009. Epub, 2022 May 16. PMID:35580610<ref>PMID:35580610</ref>
+
-
 
+
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
<div class="pdbe-citations 7poh" style="background-color:#fffaf0;"></div>
+
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Drosophila melanogaster]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Bonchuk, A N]]
+
[[Category: Bonchuk AN]]
-
[[Category: Boyko, K M]]
+
[[Category: Boyko KM]]
-
[[Category: Georgiev, P G]]
+
[[Category: Georgiev PG]]
-
[[Category: Kachalova, G S]]
+
[[Category: Kachalova GS]]
-
[[Category: Nikolaeva, A Y]]
+
[[Category: Nikolaeva AY]]
-
[[Category: Popov, V O]]
+
[[Category: Popov VO]]
-
[[Category: Dimerization]]
+
-
[[Category: Protein interaction]]
+
-
[[Category: Serenipity-d]]
+
-
[[Category: Transcription]]
+
-
[[Category: Treble-cleft-like]]
+
-
[[Category: Zad]]
+
-
[[Category: Zinc binding]]
+
-
[[Category: Zinc-finger associated domain]]
+

Revision as of 05:25, 8 September 2022

Crystal structure of ZAD-domain of Serendipity-d protein from D.melanogaster

PDB ID 7poh

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/7poh"
Personal tools