3vab
From Proteopedia
(Difference between revisions)
| Line 3: | Line 3: | ||
<StructureSection load='3vab' size='340' side='right'caption='[[3vab]], [[Resolution|resolution]] 2.10Å' scene=''> | <StructureSection load='3vab' size='340' side='right'caption='[[3vab]], [[Resolution|resolution]] 2.10Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3vab]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[3vab]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Brucella_melitensis_bv._1_str._16M Brucella melitensis bv. 1 str. 16M]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VAB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VAB FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| - | + | ||
| - | + | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vab FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vab OCA], [https://pdbe.org/3vab PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vab RCSB], [https://www.ebi.ac.uk/pdbsum/3vab PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vab ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vab FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vab OCA], [https://pdbe.org/3vab PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vab RCSB], [https://www.ebi.ac.uk/pdbsum/3vab PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vab ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
| - | + | [https://www.uniprot.org/uniprot/Q8YJJ9_BRUME Q8YJJ9_BRUME] Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine (By similarity).[HAMAP-Rule:MF_02120] | |
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Brucella melitensis bv. 1 str. 16M]] |
| - | + | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Structural genomic]] | ||
| - | [[Category: 6-diaminoheptanedioate carboxy-lyase]] | ||
| - | [[Category: Dap-decarboxylase]] | ||
| - | [[Category: Diaminopimelic acid decarboxylase]] | ||
| - | [[Category: Lyase]] | ||
| - | [[Category: Lysine biosynthesis]] | ||
| - | [[Category: Meso-2]] | ||
| - | [[Category: Meso-diaminopimelate decarboxylase]] | ||
| - | [[Category: Pyridoxal-phosphate]] | ||
| - | [[Category: Ssgcid]] | ||
Current revision
Crystal structure of Diaminopimelate decarboxylase from Brucella melitensis bound to PLP
| |||||||||||
