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3vgt

From Proteopedia

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Current revision (12:20, 8 November 2023) (edit) (undo)
 
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== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3vgt]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Halomonas_sp._#593 Halomonas sp. #593]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VGT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VGT FirstGlance]. <br>
<table><tr><td colspan='2'>[[3vgt]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Halomonas_sp._#593 Halomonas sp. #593]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VGT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VGT FirstGlance]. <br>
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</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3vgs|3vgs]], [[3vgu|3vgu]], [[3vgv|3vgv]]</div></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NDK ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=195704 Halomonas sp. #593])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Nucleoside-diphosphate_kinase Nucleoside-diphosphate kinase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.6 2.7.4.6] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vgt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vgt OCA], [https://pdbe.org/3vgt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vgt RCSB], [https://www.ebi.ac.uk/pdbsum/3vgt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vgt ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vgt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vgt OCA], [https://pdbe.org/3vgt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vgt RCSB], [https://www.ebi.ac.uk/pdbsum/3vgt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vgt ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/Q83WH5_9GAMM Q83WH5_9GAMM]] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.[HAMAP-Rule:MF_00451]
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[https://www.uniprot.org/uniprot/Q83WH5_9GAMM Q83WH5_9GAMM] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.[HAMAP-Rule:MF_00451]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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[[Category: Halomonas sp. #593]]
[[Category: Halomonas sp. #593]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Nucleoside-diphosphate kinase]]
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[[Category: Arai S]]
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[[Category: Arai, S]]
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[[Category: Ishibashi M]]
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[[Category: Ishibashi, M]]
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[[Category: Kuroki R]]
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[[Category: Kuroki, R]]
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[[Category: Matsumoto F]]
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[[Category: Matsumoto, F]]
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[[Category: Okazaki N]]
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[[Category: Okazaki, N]]
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[[Category: Tamada T]]
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[[Category: Tamada, T]]
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[[Category: Tokunaga H]]
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[[Category: Tokunaga, H]]
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[[Category: Tokunaga M]]
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[[Category: Tokunaga, M]]
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[[Category: Yonezawa Y]]
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[[Category: Yonezawa, Y]]
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[[Category: Atp-binding]]
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[[Category: Ferredoxin fold]]
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[[Category: Halophilic]]
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[[Category: Kinase]]
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[[Category: Nucleotide-binding]]
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[[Category: Transferase]]
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Current revision

Wild-type nucleoside diphosphate kinase derived from Halomonas sp. 593

PDB ID 3vgt

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