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3vnd

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Current revision (12:28, 8 November 2023) (edit) (undo)
 
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<StructureSection load='3vnd' size='340' side='right'caption='[[3vnd]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
<StructureSection load='3vnd' size='340' side='right'caption='[[3vnd]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3vnd]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Acam_591 Acam 591]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VND OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VND FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3vnd]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_frigidimarina Shewanella frigidimarina]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VND OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VND FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PE8:3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL'>PE8</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1v7y|1v7y]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PE8:3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL'>PE8</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">trpA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=56812 ACAM 591])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Tryptophan_synthase Tryptophan synthase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.20 4.2.1.20] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vnd OCA], [https://pdbe.org/3vnd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vnd RCSB], [https://www.ebi.ac.uk/pdbsum/3vnd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vnd ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vnd OCA], [https://pdbe.org/3vnd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vnd RCSB], [https://www.ebi.ac.uk/pdbsum/3vnd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vnd ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/H1AFK5_SHEFR H1AFK5_SHEFR]] The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate.[HAMAP-Rule:MF_00131][SAAS:SAAS00108583]
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[https://www.uniprot.org/uniprot/H1AFK5_SHEFR H1AFK5_SHEFR] The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate.[HAMAP-Rule:MF_00131][SAAS:SAAS00108583]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Acam 591]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Tryptophan synthase]]
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[[Category: Shewanella frigidimarina]]
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[[Category: Ishida, M]]
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[[Category: Ishida M]]
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[[Category: Matsumura, H]]
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[[Category: Matsumura H]]
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[[Category: Mitsuya, D]]
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[[Category: Mitsuya D]]
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[[Category: Takano, K]]
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[[Category: Takano K]]
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[[Category: Tanaka, S]]
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[[Category: Tanaka S]]
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[[Category: Urano, N]]
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[[Category: Urano N]]
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[[Category: Cold adaptation]]
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[[Category: Lyase]]
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[[Category: Psychrophilic enzyme]]
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Current revision

Crystal structure of tryptophan synthase alpha-subunit from the psychrophile Shewanella frigidimarina K14-2

PDB ID 3vnd

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OCA

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