3vrm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:34, 8 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3vrm' size='340' side='right'caption='[[3vrm]], [[Resolution|resolution]] 2.57&Aring;' scene=''>
<StructureSection load='3vrm' size='340' side='right'caption='[[3vrm]], [[Resolution|resolution]] 2.57&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3vrm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"streptomyces_autotrophicus"_takamiya_and_tubaki_1956 "streptomyces autotrophicus" takamiya and tubaki 1956]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VRM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VRM FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3vrm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudonocardia_autotrophica Pseudonocardia autotrophica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VRM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VRM FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=VD3:(1S,3Z)-3-[(2E)-2-[(1R,3AR,7AS)-7A-METHYL-1-[(2R)-6-METHYLHEPTAN-2-YL]-2,3,3A,5,6,7-HEXAHYDRO-1H-INDEN-4-YLIDENE]ETHYLIDENE]-4-METHYLIDENE-CYCLOHEXAN-1-OL'>VD3</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.57&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3a4g|3a4g]], [[3a4h|3a4h]], [[3a4z|3a4z]], [[3a50|3a50]], [[3a51|3a51]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=VD3:(1S,3Z)-3-[(2E)-2-[(1R,3AR,7AS)-7A-METHYL-1-[(2R)-6-METHYLHEPTAN-2-YL]-2,3,3A,5,6,7-HEXAHYDRO-1H-INDEN-4-YLIDENE]ETHYLIDENE]-4-METHYLIDENE-CYCLOHEXAN-1-OL'>VD3</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">vdh ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2074 "Streptomyces autotrophicus" Takamiya and Tubaki 1956])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Cholestanetriol_26-monooxygenase Cholestanetriol 26-monooxygenase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.14.13.15 1.14.13.15] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vrm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vrm OCA], [https://pdbe.org/3vrm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vrm RCSB], [https://www.ebi.ac.uk/pdbsum/3vrm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vrm ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vrm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vrm OCA], [https://pdbe.org/3vrm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vrm RCSB], [https://www.ebi.ac.uk/pdbsum/3vrm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vrm ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CPVDH_PSEAH CPVDH_PSEAH]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 23: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Streptomyces autotrophicus takamiya and tubaki 1956]]
 
-
[[Category: Cholestanetriol 26-monooxygenase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Nishioka, T]]
+
[[Category: Pseudonocardia autotrophica]]
-
[[Category: Tamura, T]]
+
[[Category: Nishioka T]]
-
[[Category: Yasutake, Y]]
+
[[Category: Tamura T]]
-
[[Category: Cytochrome p450]]
+
[[Category: Yasutake Y]]
-
[[Category: Hemoprotein]]
+
-
[[Category: Monooxygenase]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: P450 fold]]
+
-
[[Category: Vitamin d3]]
+

Current revision

Structure of cytochrome P450 Vdh mutant T107A with bound vitamin D3

PDB ID 3vrm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools