This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3wb9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:02, 8 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3wb9' size='340' side='right'caption='[[3wb9]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
<StructureSection load='3wb9' size='340' side='right'caption='[[3wb9]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3wb9]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Symth Symth]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WB9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WB9 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3wb9]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Symbiobacterium_thermophilum_IAM_14863 Symbiobacterium thermophilum IAM 14863]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WB9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WB9 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.93&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3wbb|3wbb]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">meso-dapdh, STH1425 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=292459 SYMTH])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Diaminopimelate_dehydrogenase Diaminopimelate dehydrogenase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.1.16 1.4.1.16] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wb9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wb9 OCA], [https://pdbe.org/3wb9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wb9 RCSB], [https://www.ebi.ac.uk/pdbsum/3wb9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wb9 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wb9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wb9 OCA], [https://pdbe.org/3wb9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wb9 RCSB], [https://www.ebi.ac.uk/pdbsum/3wb9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wb9 ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q67PI3_SYMTH Q67PI3_SYMTH]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 23: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Diaminopimelate dehydrogenase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Symth]]
+
[[Category: Symbiobacterium thermophilum IAM 14863]]
-
[[Category: Guo, R T]]
+
[[Category: Guo RT]]
-
[[Category: Huang, C H]]
+
[[Category: Huang CH]]
-
[[Category: Li, Z]]
+
[[Category: Li Z]]
-
[[Category: Liu, W D]]
+
[[Category: Liu WD]]
-
[[Category: Wu, Q Q]]
+
[[Category: Wu QQ]]
-
[[Category: Zhu, D M]]
+
[[Category: Zhu DM]]
-
[[Category: D-amino acid dehydrogenase]]
+
-
[[Category: Domain motion]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Thermo-stable]]
+

Current revision

Crystal Structures of meso-diaminopimelate dehydrogenase from Symbiobacterium thermophilum

PDB ID 3wb9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools