3wfn

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Current revision (08:44, 20 March 2024) (edit) (undo)
 
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<StructureSection load='3wfn' size='340' side='right'caption='[[3wfn]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
<StructureSection load='3wfn' size='340' side='right'caption='[[3wfn]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3wfn]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WFN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WFN FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3wfn]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WFN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WFN FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wfn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wfn OCA], [https://pdbe.org/3wfn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wfn RCSB], [https://www.ebi.ac.uk/pdbsum/3wfn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wfn ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wfn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wfn OCA], [https://pdbe.org/3wfn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wfn RCSB], [https://www.ebi.ac.uk/pdbsum/3wfn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wfn ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Disease ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/SCN8A_MOUSE SCN8A_MOUSE] Defects in Scn8a are the cause of motor endplate disease (med). Med is a recessive neuromuscular disorder that is characterized by lack of signal transmission at the neuromuscular junction, excess preterminal arborization and degeneration of cerebellar Purkinje cells. It produces early onset progressive paralysis of hind limbs, severe muscle atrophy and juvenile lethality. Defects in Scn8a are the cause of the jolting mutant (medjo), a mild form of motor endplate disease which is characterized by the absence of spontaneous, regular, simple discharges from Purkinje cells. After 3 weeks of age, jolting mice are unsteady and have wide-based gait and a rhythmical tremor of head and neck induced by attempted movement.<ref>PMID:7670495</ref> <ref>PMID:8815882</ref> Defects in Scn8a are a cause of degenerating muscle (dmu). Dmu is an autosomal recessive neuromuscular disorder that is characterized by skeletal and cardiac muscle degeneration. It produces early onset progressive loss of mobility of the hind limbs and subsequent lethality in the first month of life.<ref>PMID:11532991</ref> <ref>PMID:8663325</ref>
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The neuronal-voltage gated sodium channel (VGSC), NaV1.6, plays an important role in propagating action potentials along myelinated axons. Calmodulin (CaM) is known to modulate the inactivation kinetics of NaV1.6 by interacting with its IQ motif. Here we report the crystal structure of apo-CaM:NaV1.6IQ motif, along with functional studies. The IQ motif of NaV1.6 adopts an alpha-helical conformation in its interaction with the C-lobe of CaM. CaM uses different residues to interact with NaV1.6IQ motif depending on the presence or absence of Ca(2+). Three residues from NaV1.6, Arg1902, Tyr1904 and Arg1905 were identified as the key common interacting residues in both the presence and absence of Ca(2+). Substitution of Arg1902 and Tyr1904 with alanine showed a reduced rate of NaV1.6 inactivation in electrophysiological experiments in vivo. Compared with other CaM:NaV complexes, our results reveal a different mode of interaction for CaM:NaV1.6 and provides structural insight into the isoform-specific modulation of VGSCs.
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== Function ==
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[https://www.uniprot.org/uniprot/CALM1_MOUSE CALM1_MOUSE] Calmodulin mediates the control of a large number of enzymes, ion channels, aquaporins and other proteins through calcium-binding. Among the enzymes to be stimulated by the calmodulin-calcium complex are a number of protein kinases and phosphatases. Together with CCP110 and centrin, is involved in a genetic pathway that regulates the centrosome cycle and progression through cytokinesis. Is a regulator of voltage-dependent L-type calcium channels. Mediates calcium-dependent inactivation of CACNA1C. Positively regulates calcium-activated potassium channel activity of KCNN2. Forms a potassium channel complex with KCNQ1 and regulates electrophysiological activity of the channel via calcium-binding. Acts as a sensor to modulate the endoplasmic reticulum contacts with other organelles mediated by VMP1:ATP2A2 (By similarity).[UniProtKB:P0DP23][https://www.uniprot.org/uniprot/SCN8A_MOUSE SCN8A_MOUSE] Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. In macrophages, isoform 5 may participate in the control of podosome and invadopodia formation.<ref>PMID:19136557</ref>
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Structural Basis for the Modulation of the Neuronal Voltage-Gated Sodium Channel NaV1.6 by Calmodulin.,Chichili VP, Xiao Y, Seetharaman J, Cummins TR, Sivaraman J Sci Rep. 2013 Aug 14;3:2435. doi: 10.1038/srep02435. PMID:23942337<ref>PMID:23942337</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3wfn" style="background-color:#fffaf0;"></div>
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== References ==
== References ==
<references/>
<references/>
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Lk3 transgenic mice]]
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[[Category: Mus musculus]]
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[[Category: Chichili, V P.R]]
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[[Category: Chichili VPR]]
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[[Category: Sivaraman, J]]
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[[Category: Sivaraman J]]
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[[Category: Calcium binding protein]]
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[[Category: Ef-hand motif]]
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[[Category: Iq motif]]
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[[Category: Metal binding protein]]
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Current revision

Crystal Structure of Nav1.6 IQ motif in complex with apo-CaM

PDB ID 3wfn

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