7tra
From Proteopedia
(Difference between revisions)
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- | ==== | + | ==Cascade complex from type I-A CRISPR-Cas system== |
- | <StructureSection load='7tra' size='340' side='right'caption='[[7tra]]' scene=''> | + | <StructureSection load='7tra' size='340' side='right'caption='[[7tra]], [[Resolution|resolution]] 3.30Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7tra]] is a 19 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Pyrococcus_furiosus_DSM_3638 Pyrococcus furiosus DSM 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7TRA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7TRA FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7tra FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7tra OCA], [https://pdbe.org/7tra PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7tra RCSB], [https://www.ebi.ac.uk/pdbsum/7tra PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7tra ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.3Å</td></tr> |
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7tra FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7tra OCA], [https://pdbe.org/7tra PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7tra RCSB], [https://www.ebi.ac.uk/pdbsum/7tra PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7tra ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/A0A5C0XNV5_PYRFU A0A5C0XNV5_PYRFU] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Type I CRISPR-Cas systems typically rely on a two-step process to degrade DNA. First, an RNA-guided complex named Cascade identifies the complementary DNA target. The helicase-nuclease fusion enzyme Cas3 is then recruited in trans for processive DNA degradation. Contrary to this model, here, we show that type I-A Cascade and Cas3 function as an integral effector complex. We provide four cryoelectron microscopy (cryo-EM) snapshots of the Pyrococcus furiosus (Pfu) type I-A effector complex in different stages of DNA recognition and degradation. The HD nuclease of Cas3 is autoinhibited inside the effector complex. It is only allosterically activated upon full R-loop formation, when the entire targeted region has been validated by the RNA guide. The mechanistic insights inspired us to convert Pfu Cascade-Cas3 into a high-sensitivity, low-background, and temperature-activated nucleic acid detection tool. Moreover, Pfu CRISPR-Cas3 shows robust bi-directional deletion-editing activity in human cells, which could find usage in allele-specific inactivation of disease-causing mutations. | ||
+ | |||
+ | Allosteric control of type I-A CRISPR-Cas3 complexes and establishment as effective nucleic acid detection and human genome editing tools.,Hu C, Ni D, Nam KH, Majumdar S, McLean J, Stahlberg H, Terns MP, Ke A Mol Cell. 2022 Aug 4;82(15):2754-2768.e5. doi: 10.1016/j.molcel.2022.06.007. Epub , 2022 Jul 13. PMID:35835111<ref>PMID:35835111</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7tra" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Escherichia coli]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: | + | [[Category: Pyrococcus furiosus DSM 3638]] |
+ | [[Category: Hu C]] | ||
+ | [[Category: Ke A]] | ||
+ | [[Category: Majumdar S]] | ||
+ | [[Category: McLean J]] | ||
+ | [[Category: Nam KH]] | ||
+ | [[Category: Ni D]] | ||
+ | [[Category: Stahlberg H]] | ||
+ | [[Category: Terns M]] |
Current revision
Cascade complex from type I-A CRISPR-Cas system
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Categories: Escherichia coli | Large Structures | Pyrococcus furiosus DSM 3638 | Hu C | Ke A | Majumdar S | McLean J | Nam KH | Ni D | Stahlberg H | Terns M