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| <StructureSection load='3zu0' size='340' side='right'caption='[[3zu0]], [[Resolution|resolution]] 2.00Å' scene=''> | | <StructureSection load='3zu0' size='340' side='right'caption='[[3zu0]], [[Resolution|resolution]] 2.00Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[3zu0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Haein Haein]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZU0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZU0 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3zu0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Haemophilus_influenzae_Rd_KW20 Haemophilus influenzae Rd KW20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZU0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZU0 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A12:PHOSPHOMETHYLPHOSPHONIC+ACID+ADENOSYL+ESTER'>A12</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.001Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3ztv|3ztv]]</div></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A12:PHOSPHOMETHYLPHOSPHONIC+ACID+ADENOSYL+ESTER'>A12</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/5'-nucleotidase 5'-nucleotidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.5 3.1.3.5] </span></td></tr>
| + | |
| <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zu0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zu0 OCA], [https://pdbe.org/3zu0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zu0 RCSB], [https://www.ebi.ac.uk/pdbsum/3zu0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zu0 ProSAT]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zu0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zu0 OCA], [https://pdbe.org/3zu0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zu0 RCSB], [https://www.ebi.ac.uk/pdbsum/3zu0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zu0 ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/5NTD_HAEIN 5NTD_HAEIN] Degrades NAD into adenosine and nicotinamide riboside, the latter being subsequently internalized by a specific permease. Also endowed with NAD(P) pyrophosphatase activity. Exhibits a broad substrate specificity, recognizing either mono- or dinucleotide nicotinamides and different adenosine phosphates with a maximal activity on 5'-adenosine monophosphate.<ref>PMID:21933152</ref> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: 5'-nucleotidase]] | + | [[Category: Haemophilus influenzae Rd KW20]] |
- | [[Category: Haein]]
| + | |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Allegrone, G]] | + | [[Category: Allegrone G]] |
- | [[Category: Bruzzone, S]] | + | [[Category: Bruzzone S]] |
- | [[Category: Canella, L]] | + | [[Category: Canella L]] |
- | [[Category: Cassani, C]] | + | [[Category: Cassani C]] |
- | [[Category: Flora, A De]] | + | [[Category: De Flora A]] |
- | [[Category: Garavaglia, S]] | + | [[Category: Garavaglia S]] |
- | [[Category: Mannino, E]] | + | [[Category: Mannino E]] |
- | [[Category: Millo, E]] | + | [[Category: Millo E]] |
- | [[Category: Rizzi, M]] | + | [[Category: Rizzi M]] |
- | [[Category: Sturla, L]] | + | [[Category: Sturla L]] |
- | [[Category: Cd73]]
| + | |
- | [[Category: Hydrolase]]
| + | |
- | [[Category: Periplasmic enzyme haemophilus influenzae]]
| + | |
| Structural highlights
Function
5NTD_HAEIN Degrades NAD into adenosine and nicotinamide riboside, the latter being subsequently internalized by a specific permease. Also endowed with NAD(P) pyrophosphatase activity. Exhibits a broad substrate specificity, recognizing either mono- or dinucleotide nicotinamides and different adenosine phosphates with a maximal activity on 5'-adenosine monophosphate.[1]
Publication Abstract from PubMed
Haemophilus influenzae is a major pathogen of the respiratory tract in humans that has developed the capability to exploit host NAD(P) for its pyridine dinucleotide requirement. This strategy is organized around a periplasmic enzyme termed NadN, that plays a central role by degrading NAD into adenine and nicotinamide riboside, the latter being subsequently internalized by a specific permease. We performed a biochemical and structural investigation on H. influenzae NadN that determined the enzyme is a Zn2+-dependent 5'-nucleotidase also endowed with NAD(P) pyrophosphatase activity. A 1.3 A resolution structural analysis revealed a remarkable conformational change that occurs during catalysis between the open and closed forms of the enzyme. NadN showed a broad substrate specificity recognizing either mono or dinucleotide pyridines and different adenosine phosphates with a maximal activity on 5' adenosine monophosphate. Sequence and structural analysis of H. influenzae NadN led us to discover that human CD73 is capable of processing both NAD and NMN, therefore disclosing a possible novel function of human CD73 in systemic NAD metabolism. Our data may prove to be useful for inhibitor design and disclosed unanticipated fascinating evolutionary relationships.
The high-resolution crystal structure of periplasmic Haemophilus influenzae NAD nucleotidase reveals a novel enzymatic function of human CD73 related to NAD metabolism.,Garavaglia S, Bruzzone S, Cassani C, Canella L, Allegrone G, Sturla L, Mannino E, Millo E, De Flora A, Rizzi M Biochem J. 2011 Sep 20. PMID:21933152[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Garavaglia S, Bruzzone S, Cassani C, Canella L, Allegrone G, Sturla L, Mannino E, Millo E, De Flora A, Rizzi M. The high-resolution crystal structure of periplasmic Haemophilus influenzae NAD nucleotidase reveals a novel enzymatic function of human CD73 related to NAD metabolism. Biochem J. 2011 Sep 20. PMID:21933152 doi:10.1042/BJ20111263
- ↑ Garavaglia S, Bruzzone S, Cassani C, Canella L, Allegrone G, Sturla L, Mannino E, Millo E, De Flora A, Rizzi M. The high-resolution crystal structure of periplasmic Haemophilus influenzae NAD nucleotidase reveals a novel enzymatic function of human CD73 related to NAD metabolism. Biochem J. 2011 Sep 20. PMID:21933152 doi:10.1042/BJ20111263
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