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3wyp

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==Crystal structure of wild-type core streptavidin in complex with D-biotin/biotin-D-sulfoxide at 1.3 A resolution==
==Crystal structure of wild-type core streptavidin in complex with D-biotin/biotin-D-sulfoxide at 1.3 A resolution==
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<StructureSection load='3wyp' size='340' side='right'caption='[[3wyp]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
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<StructureSection load='3wyp' size='340' side='right'caption='[[3wyp]]' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3wyp]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WYP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WYP FirstGlance]. <br>
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WYP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WYP FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BSO:BIOTIN-D-SULFOXIDE'>BSO</scene>, <scene name='pdbligand=BTN:BIOTIN'>BTN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wyp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wyp OCA], [https://pdbe.org/3wyp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wyp RCSB], [https://www.ebi.ac.uk/pdbsum/3wyp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wyp ProSAT]</span></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3wyq|3wyq]]</div></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wyp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wyp OCA], [https://pdbe.org/3wyp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wyp RCSB], [https://www.ebi.ac.uk/pdbsum/3wyp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wyp ProSAT]</span></td></tr>
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</table>
</table>
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== Function ==
 
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[[https://www.uniprot.org/uniprot/SAV_STRAV SAV_STRAV]] The biological function of streptavidin is not known. Forms a strong non-covalent specific complex with biotin (one molecule of biotin per subunit of streptavidin).
 
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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We previously created a low-immunogenic core streptavidin mutant No. 314 (LISA-314) by replacing six amino-acid residues for use as a delivery tool for an antibody multistep pre-targeting process (Yumura et al., Protein science, 22, 213-221, 2013). Here, we performed high-resolution X-ray structural analyses of LISA-314 and wild-type streptavidin to investigate the effect of substitutions on the protein function and the three-dimensional structure. LISA-314 forms a tetramer in the same manner as wild-type streptavidin. The binding mode of d-biotin in LISA-314 is also completely identical to that in wild-type streptavidin, and conformational changes were observed mostly at the side chains of substituted sites. Any large conformational changes corresponding to the reduction of B factors around the substituted sites were not observed. These results demonstrated the LISA-314 acquired low immunogenicity without losing structural properties of original wild-type streptavidin.
 
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Crystal structure of streptavidin mutant with low immunogenicity.,Kawato T, Mizohata E, Meshizuka T, Doi H, Kawamura T, Matsumura H, Yumura K, Tsumoto K, Kodama T, Inoue T, Sugiyama A J Biosci Bioeng. 2014 Nov 26. pii: S1389-1723(14)00403-4. doi:, 10.1016/j.jbiosc.2014.10.025. PMID:25434833<ref>PMID:25434833</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 3wyp" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
*[[Avidin 3D structures|Avidin 3D structures]]
*[[Avidin 3D structures|Avidin 3D structures]]
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Doi, H]]
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[[Category: Doi H]]
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[[Category: Inoue, T]]
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[[Category: Inoue T]]
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[[Category: Kawamura, T]]
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[[Category: Kawamura T]]
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[[Category: Kawato, T]]
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[[Category: Kawato T]]
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[[Category: Kodama, T]]
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[[Category: Kodama T]]
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[[Category: Matsumura, H]]
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[[Category: Matsumura H]]
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[[Category: Meshizuka, T]]
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[[Category: Meshizuka T]]
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[[Category: Mizohata, E]]
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[[Category: Mizohata E]]
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[[Category: Sugiyama, A]]
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[[Category: Sugiyama A]]
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[[Category: Tsumoto, K]]
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[[Category: Tsumoto K]]
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[[Category: Yumura, K]]
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[[Category: Yumura K]]
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[[Category: Beta-barrel]]
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[[Category: Biotin binding protein]]
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Revision as of 10:38, 31 August 2022

Crystal structure of wild-type core streptavidin in complex with D-biotin/biotin-D-sulfoxide at 1.3 A resolution

PDB ID 3wyp

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