7fdz
From Proteopedia
(Difference between revisions)
Line 1: | Line 1: | ||
==Levansucrase from Brenneria sp. EniD 312 with sucrose== | ==Levansucrase from Brenneria sp. EniD 312 with sucrose== | ||
- | <StructureSection load='7fdz' size='340' side='right'caption='[[7fdz]]' scene=''> | + | <StructureSection load='7fdz' size='340' side='right'caption='[[7fdz]], [[Resolution|resolution]] 1.35Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7FDZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7FDZ FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7fdz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Brenneria_sp._EniD312 Brenneria sp. EniD312]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7FDZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7FDZ FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7fdz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7fdz OCA], [https://pdbe.org/7fdz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7fdz RCSB], [https://www.ebi.ac.uk/pdbsum/7fdz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7fdz ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.35Å</td></tr> |
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PE8:3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL'>PE8</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=PRD_900003:sucrose'>PRD_900003</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7fdz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7fdz OCA], [https://pdbe.org/7fdz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7fdz RCSB], [https://www.ebi.ac.uk/pdbsum/7fdz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7fdz ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/G7LSK3_9GAMM G7LSK3_9GAMM] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Microbial levansucrases (LSs, EC 2.4.1.10) have been widely studied for the synthesis of beta-(2,6)-fructans (levan) from sucrose. LSs synthesize levan-type fructo-oligosaccharides, high-molecular-mass levan polymer or combinations of both. Here, we report crystal structures of LS from the G(-)-bacterium Brenneria sp. EniD 312 (Brs-LS) in its apo form, as well as of two mutants (A154S, H327A) targeting positions known to affect LS reaction specificity. In addition, we report a structure of Brs-LS complexed with sucrose, the first crystal structure of a G(-)-LS with a bound substrate. The overall structure of Brs-LS is similar to that of G(-)- and G(+)-LSs, with the nucleophile (D68), transition stabilizer (D225), and a general acid/base (E309) in its active site. The H327A mutant lacks an essential interaction with glucosyl moieties of bound substrates in subsite +1, explaining the observed smaller products synthesized by this mutant. The A154S mutation affects the hydrogen-bond network around the transition stabilizing residue (D225) and the nucleophile (D68), and may affect the affinity of the enzyme for sucrose such that it becomes less effective in transfructosylation. Taken together, this study provides novel insights into the roles of structural elements and residues in the product specificity of LSs. | ||
+ | |||
+ | Crystal Structure of Levansucrase from the Gram-Negative Bacterium Brenneria Provides Insights into Its Product Size Specificity.,Xu W, Ni D, Hou X, Pijning T, Guskov A, Rao Y, Mu W J Agric Food Chem. 2022 Apr 7. doi: 10.1021/acs.jafc.2c01225. PMID:35388691<ref>PMID:35388691</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7fdz" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Brenneria sp. EniD312]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Guskov A]] | [[Category: Guskov A]] |
Current revision
Levansucrase from Brenneria sp. EniD 312 with sucrose
|
Categories: Brenneria sp. EniD312 | Large Structures | Guskov A | Hou XD | Mu WM | Pijning T | Rao YJ | Xu W