1gbv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:1gbv.gif|left|200px]]<br />
+
[[Image:1gbv.gif|left|200px]]<br /><applet load="1gbv" size="350" color="white" frame="true" align="right" spinBox="true"
-
<applet load="1gbv" size="450" color="white" frame="true" align="right" spinBox="true"
+
caption="1gbv, resolution 2.0&Aring;" />
caption="1gbv, resolution 2.0&Aring;" />
'''(ALPHA-OXY, BETA-(C112G)DEOXY) T-STATE HUMAN HEMOGLOBIN'''<br />
'''(ALPHA-OXY, BETA-(C112G)DEOXY) T-STATE HUMAN HEMOGLOBIN'''<br />
==Overview==
==Overview==
-
Three variants of tetrameric human hemoglobin, with changes at the, alpha1beta2/alpha2beta1-interface, at the, alpha1beta1/alpha2beta2-interface, and at both interfaces, have been, constructed. At alpha1beta2/alpha2beta1-interface the beta93 cysteine was, replaced by alanine (betaC93A), and at the, alpha1beta1/alpha2beta2-interface the beta112 cysteine was replaced by, glycine (betaC112G). The alpha1beta2 interface variant, betaC93A, and the, alpha1beta1/alpha1beta2 double mutant, beta(C93A+C112G), were crystallized, in the T-state, and the structures determined at 2. 0 and 1.8 A, resolution, respectively. A comparison of the structures with that of, natural hemoglobin A shows the absence of detectable changes in the, tertiary folding of the protein or in the T-state quaternary assembly. At, the beta112 site, the void left by the removal of the cysteine side chain, is filled by a water molecule, and the functional characteristics of, betaC112G are essentially those of human hemoglobin A. At the beta93 site, water molecules do not replace the cysteine side chain, and the alanine, substitution increases the conformational freedom of beta146His, weakening, the important interaction of this residue with beta94Asp. As a result, when Cl- is present in the solution, at a concentration 100 mM, the Bohr, effect of the two mutants carrying the beta93Cys--&gt;Ala substitution, betaC93A and beta(C93A+C112G), is significantly modified being practically, absent below pH 7.4. Based on the crystallographic data, we attribute, these effects to the competition between beta94Asp and Cl- in the salt, link with beta146His in T-state hemoglobin. These results point to an, interplay between the betaHis146-betaAsp94 salt bridge and the Cl- in, solution regulated by the Cys present at position beta93, indicating yet, another role of beta93 Cys in the regulation of hemoglobin function.
+
Three variants of tetrameric human hemoglobin, with changes at the alpha1beta2/alpha2beta1-interface, at the alpha1beta1/alpha2beta2-interface, and at both interfaces, have been constructed. At alpha1beta2/alpha2beta1-interface the beta93 cysteine was replaced by alanine (betaC93A), and at the alpha1beta1/alpha2beta2-interface the beta112 cysteine was replaced by glycine (betaC112G). The alpha1beta2 interface variant, betaC93A, and the alpha1beta1/alpha1beta2 double mutant, beta(C93A+C112G), were crystallized in the T-state, and the structures determined at 2. 0 and 1.8 A resolution, respectively. A comparison of the structures with that of natural hemoglobin A shows the absence of detectable changes in the tertiary folding of the protein or in the T-state quaternary assembly. At the beta112 site, the void left by the removal of the cysteine side chain is filled by a water molecule, and the functional characteristics of betaC112G are essentially those of human hemoglobin A. At the beta93 site, water molecules do not replace the cysteine side chain, and the alanine substitution increases the conformational freedom of beta146His, weakening the important interaction of this residue with beta94Asp. As a result, when Cl- is present in the solution, at a concentration 100 mM, the Bohr effect of the two mutants carrying the beta93Cys--&gt;Ala substitution, betaC93A and beta(C93A+C112G), is significantly modified being practically absent below pH 7.4. Based on the crystallographic data, we attribute these effects to the competition between beta94Asp and Cl- in the salt link with beta146His in T-state hemoglobin. These results point to an interplay between the betaHis146-betaAsp94 salt bridge and the Cl- in solution regulated by the Cys present at position beta93, indicating yet another role of beta93 Cys in the regulation of hemoglobin function.
==Disease==
==Disease==
Line 11: Line 10:
==About this Structure==
==About this Structure==
-
1GBV is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with HEM and OXY as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1GBV OCA].
+
1GBV is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=HEM:'>HEM</scene> and <scene name='pdbligand=OXY:'>OXY</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GBV OCA].
==Reference==
==Reference==
Line 18: Line 17:
[[Category: Protein complex]]
[[Category: Protein complex]]
[[Category: Fronticelli, C.]]
[[Category: Fronticelli, C.]]
-
[[Category: Gilliland, G.L.]]
+
[[Category: Gilliland, G L.]]
[[Category: Ji, X.]]
[[Category: Ji, X.]]
[[Category: Pechik, I.]]
[[Category: Pechik, I.]]
-
[[Category: Vasquez, G.B.]]
+
[[Category: Vasquez, G B.]]
[[Category: HEM]]
[[Category: HEM]]
[[Category: OXY]]
[[Category: OXY]]
Line 33: Line 32:
[[Category: partially oxygenated]]
[[Category: partially oxygenated]]
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 17:02:53 2007''
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 12:48:30 2008''

Revision as of 10:48, 21 February 2008


1gbv, resolution 2.0Å

Drag the structure with the mouse to rotate

(ALPHA-OXY, BETA-(C112G)DEOXY) T-STATE HUMAN HEMOGLOBIN

Contents

Overview

Three variants of tetrameric human hemoglobin, with changes at the alpha1beta2/alpha2beta1-interface, at the alpha1beta1/alpha2beta2-interface, and at both interfaces, have been constructed. At alpha1beta2/alpha2beta1-interface the beta93 cysteine was replaced by alanine (betaC93A), and at the alpha1beta1/alpha2beta2-interface the beta112 cysteine was replaced by glycine (betaC112G). The alpha1beta2 interface variant, betaC93A, and the alpha1beta1/alpha1beta2 double mutant, beta(C93A+C112G), were crystallized in the T-state, and the structures determined at 2. 0 and 1.8 A resolution, respectively. A comparison of the structures with that of natural hemoglobin A shows the absence of detectable changes in the tertiary folding of the protein or in the T-state quaternary assembly. At the beta112 site, the void left by the removal of the cysteine side chain is filled by a water molecule, and the functional characteristics of betaC112G are essentially those of human hemoglobin A. At the beta93 site, water molecules do not replace the cysteine side chain, and the alanine substitution increases the conformational freedom of beta146His, weakening the important interaction of this residue with beta94Asp. As a result, when Cl- is present in the solution, at a concentration 100 mM, the Bohr effect of the two mutants carrying the beta93Cys-->Ala substitution, betaC93A and beta(C93A+C112G), is significantly modified being practically absent below pH 7.4. Based on the crystallographic data, we attribute these effects to the competition between beta94Asp and Cl- in the salt link with beta146His in T-state hemoglobin. These results point to an interplay between the betaHis146-betaAsp94 salt bridge and the Cl- in solution regulated by the Cys present at position beta93, indicating yet another role of beta93 Cys in the regulation of hemoglobin function.

Disease

Known diseases associated with this structure: Erythremias, alpha- OMIM:[141800], Erythremias, beta- OMIM:[141900], Erythrocytosis OMIM:[141850], HPFH, deletion type OMIM:[141900], Heinz body anemia OMIM:[141850], Heinz body anemias, alpha- OMIM:[141800], Heinz body anemias, beta- OMIM:[141900], Hemoglobin H disease OMIM:[141850], Hypochromic microcytic anemia OMIM:[141850], Methemoglobinemias, alpha- OMIM:[141800], Methemoglobinemias, beta- OMIM:[141900], Sickle cell anemia OMIM:[141900], Thalassemia, alpha- OMIM:[141850], Thalassemia-beta, dominant inclusion-body OMIM:[141900], Thalassemias, alpha- OMIM:[141800], Thalassemias, beta- OMIM:[141900]

About this Structure

1GBV is a Protein complex structure of sequences from Homo sapiens with and as ligands. Full crystallographic information is available from OCA.

Reference

Cysteines beta93 and beta112 as probes of conformational and functional events at the human hemoglobin subunit interfaces., Vasquez GB, Karavitis M, Ji X, Pechik I, Brinigar WS, Gilliland GL, Fronticelli C, Biophys J. 1999 Jan;76(1 Pt 1):88-97. PMID:9876125

Page seeded by OCA on Thu Feb 21 12:48:30 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools