4g2e
From Proteopedia
(Difference between revisions)
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== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[4g2e]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfurisphaera_tokodaii_str._7 Sulfurisphaera tokodaii str. 7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G2E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4G2E FirstGlance]. <br> | <table><tr><td colspan='2'>[[4g2e]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfurisphaera_tokodaii_str._7 Sulfurisphaera tokodaii str. 7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G2E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4G2E FirstGlance]. <br> | ||
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4g2e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4g2e OCA], [https://pdbe.org/4g2e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4g2e RCSB], [https://www.ebi.ac.uk/pdbsum/4g2e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4g2e ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4Å</td></tr> |
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4g2e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4g2e OCA], [https://pdbe.org/4g2e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4g2e RCSB], [https://www.ebi.ac.uk/pdbsum/4g2e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4g2e ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
[https://www.uniprot.org/uniprot/F9VNL8_SULTO F9VNL8_SULTO] | [https://www.uniprot.org/uniprot/F9VNL8_SULTO F9VNL8_SULTO] | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | Peroxiredoxins (Prx) make up a family of enzymes that reduce peroxides using a peroxidatic cysteine residue; among these, members of the PrxQ subfamily are proposed to be the most ancestral-like yet are among the least characterized. In many PrxQ enzymes, a second "resolving" cysteine is located five residues downstream from the peroxidatic Cys, and these residues form a disulfide during the catalytic cycle. Here, we describe three hyperthermophilic PrxQ crystal structures originally determined by the RIKEN structural genomics group. We reprocessed the diffraction data and conducted further refinement to yield models with R(free) values lowered by 2.3-7.2% and resolution extended by 0.2-0.3 A, making one, at 1.4 A, one of the best resolved peroxiredoxins to date. Comparisons of two matched thiol and disulfide forms reveal that the active site conformational change required for disulfide formation involves a transition of approximately 20 residues from a pair of alpha-helices to a beta-hairpin and 3(10)-helix. Each conformation has approximately 10 residues with a high level of disorder providing slack that allows the dramatic shift, and the two conformations are anchored to the protein core by distinct nonpolar side chains that fill three hydrophobic pockets. Sequence conservation patterns confirm the importance of these and a few additional residues for function. From a broader perspective, this study raises the provocative question of how to make use of the valuable information in the Protein Data Bank generated by structural genomics projects but not described in the literature, perhaps remaining unrecognized and certainly underutilized. | ||
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- | Mapping the Active Site Helix-to-Strand Conversion of CxxxxC Peroxiredoxin Q Enzymes.,Perkins A, Gretes MC, Nelson KJ, Poole LB, Karplus PA Biochemistry. 2012 Sep 14. PMID:22928725<ref>PMID:22928725</ref> | ||
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- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 4g2e" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
*[[Peroxiredoxin 3D structures|Peroxiredoxin 3D structures]] | *[[Peroxiredoxin 3D structures|Peroxiredoxin 3D structures]] | ||
- | == References == | ||
- | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> |
Current revision
Crystal structure of a dimeric PrxQ from Sulfolobus tokodaii
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