7toj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:13, 17 October 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='7toj' size='340' side='right'caption='[[7toj]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
<StructureSection load='7toj' size='340' side='right'caption='[[7toj]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[7toj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Chryseobacterium_sp._YR480 Chryseobacterium sp. YR480]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7TOJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7TOJ FirstGlance]. <br>
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7TOJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7TOJ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7toj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7toj OCA], [https://pdbe.org/7toj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7toj RCSB], [https://www.ebi.ac.uk/pdbsum/7toj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7toj ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7toj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7toj OCA], [https://pdbe.org/7toj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7toj RCSB], [https://www.ebi.ac.uk/pdbsum/7toj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7toj ProSAT]</span></td></tr>
</table>
</table>
-
== Function ==
 
-
[https://www.uniprot.org/uniprot/A0A1M6XU10_9FLAO A0A1M6XU10_9FLAO]
 
-
<div style="background-color:#fffaf0;">
 
-
== Publication Abstract from PubMed ==
 
-
Acetylated glucuronoxylan is one of the most common types of hemicellulose in nature. The structure is formed by a beta-(1--&gt;4)-linked D-xylopyranosyl (Xylp) backbone that can be substituted with an acetyl group at O-2 and O-3 positions, and alpha-(1--&gt;2)-linked 4-O-methylglucopyranosyluronic acid (MeGlcpA). Acetyl xylan esterases (AcXE) that target mono- or doubly acetylated Xylp are well characterized; however, the previously studied AcXE from Flavobacterium johnsoniae (FjoAcXE) was the first to remove the acetyl group from 2-O-MeGlcpA-3-O-acetyl-substituted Xylp units, yet structural characteristics of these enzymes remain unspecified. Here, six homologs of FjoAcXE were produced and three crystal structures of the enzymes were solved. Two of them are complex structures, one with bound MeGlcpA and another with acetate. All homologs were confirmed to release acetate from 2-O-MeGlcpA-3-O-acetyl-substituted xylan, and the crystal structures point to key structural elements that might serve as defining features of this unclassified carbohydrate esterase family. Enzymes comprised two domains: N-terminal CBM domain and a C-terminal SGNH domain. In FjoAcXE and all studied homologs, the sequence motif around the catalytic serine is Gly-Asn-Ser-Ile (GNSI), which differs from other SGNH hydrolases. Binding by the MeGlcpA-Xylp ligand is directed by positively charged and highly conserved residues at the interface of the CBM and SGNH domains of the enzyme.
 
- 
-
Elucidating Sequence and Structural Determinants of Carbohydrate Esterases for Complete Deacetylation of Substituted Xylans.,Penttinen L, Kouhi V, Faure R, Skarina T, Stogios P, Master E, Jurak E Molecules. 2022 Apr 20;27(9). pii: molecules27092655. doi:, 10.3390/molecules27092655. PMID:35566004<ref>PMID:35566004</ref>
 
- 
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
-
</div>
 
-
<div class="pdbe-citations 7toj" style="background-color:#fffaf0;"></div>
 
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Chryseobacterium sp. YR480]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Di Leo R]]
[[Category: Di Leo R]]

Current revision

Crystal structure of carbohydrate esterase CspAcXE, apoenzyme

PDB ID 7toj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools