Sandbox Reserved 1761

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== Important amino acids==
== Important amino acids==
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The ligands of ''h''OAT are y-aminobutyric acid (GABA), 5-aminovaleric acid (AVA), and L-2,4-diaminobutyric acid (DABA). The highest affinity of binding with ''h''OAT is GABA. It also has a higher percentage of return in the reverse reaction. The role of the catalytic amino acids in an enzyme is to bind to a substrate, changing the structure, causing bonds to break and new bonds to be formed. When there is a difficult reaction, the triad of amino acids works in tandem to facilitate the reaction.<ref>https://doi.org/10.1016/j.jbc.2022.101969</ref>
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The ligand of ''h''OAT is Pyridoxal-5'-Phosphate <scene name='93/934005/Plp/1'>(PLP)</scene>. Amino acids include y-aminobutyric acid (GABA), 5-aminovaleric acid (AVA), and L-2,4-diaminobutyric acid (DABA). The highest affinity of binding with ''h''OAT is GABA. It also has a higher percentage of return in the reverse reaction. The role of the catalytic amino acids in an enzyme is to bind to a substrate, changing the structure, causing bonds to break and new bonds to be formed. When there is a difficult reaction, the triad of amino acids works in tandem to facilitate the reaction.<ref>https://doi.org/10.1016/j.jbc.2022.101969</ref>
== Structural highlights ==
== Structural highlights ==
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<scene name='93/934005/Tert/1'>Tertiary/Quaternary Features</scene>
<scene name='93/934005/Tert/1'>Tertiary/Quaternary Features</scene>
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== Other Important Features ==
 
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Feature #1
 
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Feature #2
 
</StructureSection>
</StructureSection>

Revision as of 06:21, 13 December 2022

This Sandbox is Reserved from November 4, 2022 through January 1, 2023 for use in the course CHEM 351 Biochemistry taught by Bonnie Hall at the Grand View University, Des Moines, USA. This reservation includes Sandbox Reserved 1755 through Sandbox Reserved 1764.
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Human ornithine aminotransferase (hOAT)

Caption for this structure

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References

  1. Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
  3. https://doi.org/10.1016/j.jbc.2022.101969
  4. https://doi.org/10.1016/j.jbc.2022.101969
  5. https://doi.org/10.1016/j.jbc.2022.101969

Butrin, A., Butrin, A., Wawrzak, Z., Moran, G. R., & Liu, D. (2022). Determination of the ph dependence, substrate specificity, and turnovers of alternative substrates for human ornithine aminotransferase. Journal of Biological Chemistry, 298(6), 101969. https://doi.org/10.1016/j.jbc.2022.101969

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