Deaminase 3D structures
From Proteopedia
(Difference between revisions)
| Line 18: | Line 18: | ||
**[[4f3w]] – CDA – ''Mycobacterium marinum'' <BR /> | **[[4f3w]] – CDA – ''Mycobacterium marinum'' <BR /> | ||
**[[6kw6]] – CDA – ''Streptomyces noursei''<BR /> | **[[6kw6]] – CDA – ''Streptomyces noursei''<BR /> | ||
| + | **[[7zob]] – CDA – metagenome<BR /> | ||
*''Cytidine deaminase complex with nucleoside'' | *''Cytidine deaminase complex with nucleoside'' | ||
| Line 35: | Line 36: | ||
*Cytosine deaminase | *Cytosine deaminase | ||
| - | **[[1rb7]], [[1uaq]] – yCDDA <BR /> | + | **[[1rb7]], [[1uaq]], [[8vlk]] – yCDDA <BR /> |
| - | **[[1ysb]], [[1ysd]] – yCDDA (mutant)<BR /> | + | **[[1ysb]], [[1ysd]], [[8i3n]], [[8vll]], [[8vlm]] – yCDDA (mutant)<BR /> |
**[[1k6w]] – EcCDDA <BR /> | **[[1k6w]] – EcCDDA <BR /> | ||
**[[1r9x]], [[1r9y]], [[1r9z]], [[1ra0]], [[1ra5]], [[3g77]] – EcCDDA (mutant)<BR /> | **[[1r9x]], [[1r9y]], [[1r9z]], [[1ra0]], [[1ra5]], [[3g77]] – EcCDDA (mutant)<BR /> | ||
| Line 42: | Line 43: | ||
*''Cytosine deaminase complex'' | *''Cytosine deaminase complex'' | ||
| - | **[[1ox7]] – yCDDA + Zn <BR /> | + | **[[1ox7]], [[8vlj]] – yCDDA + Zn <BR /> |
| + | **[[8i3o]] – yCDDA (mutant) + Mn<BR /> | ||
**[[1p6o]] – yCDDA + pyrimidine derivative<BR /> | **[[1p6o]] – yCDDA + pyrimidine derivative<BR /> | ||
| - | **[[2o3k]] – yCDDA (mutant) + pyrimidine derivative<BR /> | + | **[[2o3k]], [[8i3p]] – yCDDA (mutant) + pyrimidine derivative<BR /> |
**[[3r0d]] – EcCDDA + Zn <BR /> | **[[3r0d]] – EcCDDA + Zn <BR /> | ||
**[[3rn6]] – EcCDDA + Zn + iso-guanine<BR /> | **[[3rn6]] – EcCDDA + Zn + iso-guanine<BR /> | ||
| Line 56: | Line 58: | ||
**[[2w4l]] – hDCMP<BR /> | **[[2w4l]] – hDCMP<BR /> | ||
| + | **[[88vl]] – hDCMP + HIV VIF + CBF-beta + EloB + EloC + RNA – Cryo EM<BR /> | ||
| + | **[[7uu3]], [[7uu4]], [[7uu5]], [[8edj]] – rmDCMP + RNA – rhesus monkey<BR /> | ||
| + | **[[8tvc]], [[8tx4]] – rmDCMP + DNA <BR /> | ||
| + | **[[8e40]] – rmDCMP + HIV VIF + CBF-beta + RNA – Cryo EM<BR /> | ||
**[[5jfy]] – DCMP - cabbage<BR /> | **[[5jfy]] – DCMP - cabbage<BR /> | ||
**[[2hvv]], [[2hvw]] – SmDCMP - ''Streptococcus mutans'' <BR /> | **[[2hvv]], [[2hvw]] – SmDCMP - ''Streptococcus mutans'' <BR /> | ||
| Line 119: | Line 125: | ||
**[[7lqm]] – GPD – ''Pasteurelia multocida'' <BR /> | **[[7lqm]] – GPD – ''Pasteurelia multocida'' <BR /> | ||
**[[7lqn]] – GPD –'' Haemophilus influenzae''<BR /> | **[[7lqn]] – GPD –'' Haemophilus influenzae''<BR /> | ||
| + | **[[8eol]] – SdGPD – ''Shewanella denitrificans''<BR /> | ||
| + | **[[8eym]] – SdGPD + glucosamine-6-phosphate derivatives<BR /> | ||
| + | |||
*1-aminocyclopropane-1-carboxylate (ACC) deaminase | *1-aminocyclopropane-1-carboxylate (ACC) deaminase | ||
| Line 174: | Line 183: | ||
**[[3iau]] – THD + PLP derivative – tomato<BR /> | **[[3iau]] – THD + PLP derivative – tomato<BR /> | ||
**[[1tdj]] – EcTHD + PLP <BR /> | **[[1tdj]] – EcTHD + PLP <BR /> | ||
| + | **[[8zkv]] – EcTHD (mutant) + PLP <BR /> | ||
| + | **[[8zlv]] – EcTHD + PLP derivative <BR /> | ||
**[[2gn0]], [[2gn1]] – StTHD + PLP derivative – ''Salmonella typhimurium''<BR /> | **[[2gn0]], [[2gn1]] – StTHD + PLP derivative – ''Salmonella typhimurium''<BR /> | ||
**[[2gn2]] – StTHD + PLP derivative + CMP<BR /> | **[[2gn2]] – StTHD + PLP derivative + CMP<BR /> | ||
**[[1ve5]] – THD + PLP – ''Thermus thermophilus''<BR /> | **[[1ve5]] – THD + PLP – ''Thermus thermophilus''<BR /> | ||
| + | **[[8y1j]] – THD + PLP derivative – ''Pseudomonas aeruginosa''<BR /> | ||
*L-serine deaminase | *L-serine deaminase | ||
Revision as of 08:44, 26 March 2025
3D Structures of deaminase
Updated on 26-March-2025
