Dehalogenase 3D structures

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Current revision (09:29, 31 March 2025) (edit) (undo)
 
Line 12: Line 12:
**[[1be0]], [[1bee]], [[1hde]], [[1bez]] – XaHLD (mutant) <br />
**[[1be0]], [[1bee]], [[1hde]], [[1bez]] – XaHLD (mutant) <br />
**[[3wi7]] – AtHLD DatA – ''Agrobacterium tumefaciens''<br />
**[[3wi7]] – AtHLD DatA – ''Agrobacterium tumefaciens''<br />
-
**[[3wib]] – AtHLD DatA (mutant) <br />
+
**[[3wib]], [[9ldq]] – AtHLD DatA (mutant) <br />
**[[2xt0]] – HLD DppA – ''Plesiocystis pacifica'' <br />
**[[2xt0]] – HLD DppA – ''Plesiocystis pacifica'' <br />
-
**[[7pw1]] – HLD – synthetic<br />
+
**[[8b5k]], [[8b5o]] – HLD – ''Mycobacterium marinum''<br />
 +
**[[6ty7]], [[7pw1]], [[8oe2]], [[8oe6]] – HLD – synthetic<br />
*Haloalkane dehalogenase from ''Rhodococcus rhodochrous'' DhaA
*Haloalkane dehalogenase from ''Rhodococcus rhodochrous'' DhaA
-
**[[1bn6]], [[1bn7]], [[4kaf]], [[4kaa]], [[4kac]] – RrHLD – ''Rhodococcus rhodochrous''<br />
+
**[[1bn6]], [[1bn7]], [[4kaf]], [[4kaa]], [[4kac]], [[8b6n]], [[8b6o]], [[8b6p]] – RrHLD – ''Rhodococcus rhodochrous''<br />
**[[2v9z]], [[5flk]], [[5y2x]], [[6sp5]], [[6xtc]], [[7o3o]], [[7o8b]] – RrHLD (mutant) <br />
**[[2v9z]], [[5flk]], [[5y2x]], [[6sp5]], [[6xtc]], [[7o3o]], [[7o8b]] – RrHLD (mutant) <br />
 +
**[[8b6q]] – RrHLD/calmodulin<br />
 +
**[[8b6s]], [[8b6t]] – RrHLD/GFP<br />
 +
**[[7zbd]], [[7ziw]], [[8b6r]], [[8sw8]], [[9jha]] – RrHLD + substrate <br />
 +
**[[7zba]], [[7zbb]] – RrHLD + ligand <br />
**[[4e46]] – RrHLD + propanol <br />
**[[4e46]] – RrHLD + propanol <br />
**[[6zcc]], [[7ond]], [[7oo4]] – RrHLD + flurophore<br />
**[[6zcc]], [[7ond]], [[7oo4]] – RrHLD + flurophore<br />
Line 25: Line 30:
**[[7pcw]], [[7pcx]] – RrHLD DhaA (mutant) + chloroalkane derivative<br />
**[[7pcw]], [[7pcx]] – RrHLD DhaA (mutant) + chloroalkane derivative<br />
**[[7wam]], [[7wan]] – RrHLD DhaA (mutant) + quinoline derivative<br />
**[[7wam]], [[7wan]] – RrHLD DhaA (mutant) + quinoline derivative<br />
 +
**[[6y7a]], [[6zvv]], [[6zvu]], [[6zvw]], [[6zvy]], [[7ziv]], [[7zix]], [[7ziy]], [[7ziz]], [[7zj0]] – RrHLD + rhodamine derivative<br />
 +
**[[8j1o]] – RrHLD + triazole derivative<br />
*Haloalkane dehalogenase from ''Sphingomonas paucimobolis'' LinB
*Haloalkane dehalogenase from ''Sphingomonas paucimobolis'' LinB
Line 71: Line 78:
**[[3r3u]], [[5nyv]], [[5k3d]], [[5k3c]], [[6gxh]], [[6gxl]], [[6muh]], [[6muy]], [[6mzz]], [[6n00]], [[6fsx]], [[5o2i]], [[5o2g]] – RpFDH – ''Rhodopseudomonas palustris''<br />
**[[3r3u]], [[5nyv]], [[5k3d]], [[5k3c]], [[6gxh]], [[6gxl]], [[6muh]], [[6muy]], [[6mzz]], [[6n00]], [[6fsx]], [[5o2i]], [[5o2g]] – RpFDH – ''Rhodopseudomonas palustris''<br />
**[[3r40]], [[3r41]], [[5t4t]], [[5k3f]], [[5k3e]] – RpFDH (mutant) <br />
**[[3r40]], [[3r41]], [[5t4t]], [[5k3f]], [[5k3e]] – RpFDH (mutant) <br />
 +
**[[8sdc]] – DaFDH – ''Dechloromonas aromatica''<br />
 +
**[[8sdd]] – DaFDH (mutant) <br />
*''Fluoroacetate dehalogenase complexes''
*''Fluoroacetate dehalogenase complexes''
Line 86: Line 95:
*Halohydrin dehalogenase (HHDH)
*Halohydrin dehalogenase (HHDH)
-
**[[1zmo]] – HHDH – ''Anthrobacter''<br />
+
**[[1zmo]] – HHDH – ''Athrobacter''<br />
 +
**[[8oxf]] – ArtFDH (mutant) <br />
**[[3zn2]] – AtHHDH <br />
**[[3zn2]] – AtHHDH <br />
**[[7wkq]] – HHDH – ''Acidimicrobila bacterium'' <br />
**[[7wkq]] – HHDH – ''Acidimicrobila bacterium'' <br />
Line 101: Line 111:
**[[5kwe]] – RrHHDH (mutant) + Cl<br />
**[[5kwe]] – RrHHDH (mutant) + Cl<br />
**[[5kvc]] – RrHHDH (mutant) + imidazole + Cl<br />
**[[5kvc]] – RrHHDH (mutant) + imidazole + Cl<br />
 +
**[[8xxb]] – HHDH (mutant) + Cl – ''Thauera aminoaromatica''<br />
*L-2-haloacid dehalogenase (LHDH) or (S)-2-haloacid dehalogenase
*L-2-haloacid dehalogenase (LHDH) or (S)-2-haloacid dehalogenase
**[[1jud]] – PsLHDH – ''Pseudomonas''<br />
**[[1jud]] – PsLHDH – ''Pseudomonas''<br />
 +
**[[8yvw]] – PsLHDH (mutant)<br />
**[[2w43]] – StLHDH – ''Sulfolobus tokodaii''<br />
**[[2w43]] – StLHDH – ''Sulfolobus tokodaii''<br />
**[[2yml]], [[2ymm]], [[2ymp]], [[2ymq]] – RhLHDH <br />
**[[2yml]], [[2ymm]], [[2ymp]], [[2ymq]] – RhLHDH <br />
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**[[3umg]] – LHDH – ''Rhodococcus jostii'' <br />
**[[3umg]] – LHDH – ''Rhodococcus jostii'' <br />
**[[2no4]] – BcLHDH IVA – ''Burkholderia cepacia''<br />
**[[2no4]] – BcLHDH IVA – ''Burkholderia cepacia''<br />
-
**[[7arp]] – ZgLHDH – ''Zobellia galactanivorans''<br />
+
**[[7arp]], [[7qnm]] – ZgLHDH – ''Zobellia galactanivorans''<br />
**[[7asz]] – ZgLHDH (mutant)<br />
**[[7asz]] – ZgLHDH (mutant)<br />
 +
**[[8hp5]], [[8hp6]], [[8hp7]] – LHDH (mutant) - ''Novosphingobium''<br />
 +
**[[8wbr]] – KlLHDH – Klebsiella<br />
 +
**[[8wbs]] – KlLHDH (mutant)<br />
*''L-2-haloacid dehalogenase complexes''
*''L-2-haloacid dehalogenase complexes''
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**[[5yak]] – hITDH 1 (mutant) + FMN + fluorotyrosine <br />
**[[5yak]] – hITDH 1 (mutant) + FMN + fluorotyrosine <br />
-
*cis-3-chloroacrylic acid dehalogenase (CaaD)
+
*cis-3-chloroacrylic acid dehalogenase (CaaD) or oxalocrotonate tautomerase
-
**[[2flz]], [[3mf8]] – CbCaaD – ''Coryneform bacterium''<br />
+
**[[2flz]], [[3mf8]], [[7ms0]] – CbCaaD – ''Coryneform bacterium''<br />
**[[3mf7]] – CbCaaD + oxirane-carboxylate <br />
**[[3mf7]] – CbCaaD + oxirane-carboxylate <br />
**[[2flt]] – CbCaaD + lactic acid<br />
**[[2flt]] – CbCaaD + lactic acid<br />
 +
**[[7ms1]], [[7ms8]], [[7ms9]] – CbCaaD (mutant) + intermediate<br />
*trans-3-chloroacrylic acid dehalogenase (TaaD)
*trans-3-chloroacrylic acid dehalogenase (TaaD)
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**[[5obi]], [[5obp]] – SmTCRD catalytic subunit + cofactor<br />
**[[5obi]], [[5obp]] – SmTCRD catalytic subunit + cofactor<br />
**[[4ur2]] – SmTCRD catalytic subunit + iodide<br />
**[[4ur2]] – SmTCRD catalytic subunit + iodide<br />
-
 
+
**[[8q4h]] – TCRD + cobalamin + menaquinone – ''Desulfitobacterium hafniense''<br />
}}
}}
 +
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

3D structures of dehalogenase

Updated on 31-March-2025

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

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