This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
4q5k
From Proteopedia
(Difference between revisions)
| Line 4: | Line 4: | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[4q5k]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_uniformis_ATCC_8492 Bacteroides uniformis ATCC 8492]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q5K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4Q5K FirstGlance]. <br> | <table><tr><td colspan='2'>[[4q5k]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_uniformis_ATCC_8492 Bacteroides uniformis ATCC 8492]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q5K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4Q5K FirstGlance]. <br> | ||
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2YP:(2R)-2-[[(1R,2S,3R,4R,5R)-4-ACETAMIDO-2-[(2S,3R,4R,5S,6R)-3-ACETAMIDO-6-(HYDROXYMETHYL)-4,5-BIS(OXIDANYL)OXAN-2-YL]OXY-6,8-DIOXABICYCLO[3.2.1]OCTAN-3-YL]OXY]PROPANOIC+ACID'>2YP</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2YP:(2R)-2-[[(1R,2S,3R,4R,5R)-4-ACETAMIDO-2-[(2S,3R,4R,5S,6R)-3-ACETAMIDO-6-(HYDROXYMETHYL)-4,5-BIS(OXIDANYL)OXAN-2-YL]OXY-6,8-DIOXABICYCLO[3.2.1]OCTAN-3-YL]OXY]PROPANOIC+ACID'>2YP</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4q5k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q5k OCA], [https://pdbe.org/4q5k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4q5k RCSB], [https://www.ebi.ac.uk/pdbsum/4q5k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4q5k ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4q5k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q5k OCA], [https://pdbe.org/4q5k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4q5k RCSB], [https://www.ebi.ac.uk/pdbsum/4q5k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4q5k ProSAT]</span></td></tr> | ||
</table> | </table> | ||
Current revision
Crystal structure of a N-acetylmuramoyl-L-alanine amidase (BACUNI_02947) from Bacteroides uniformis ATCC 8492 at 1.30 A resolution
| |||||||||||
