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1jt8

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{{STRUCTURE_1jt8| PDB=1jt8 | SCENE= }}
{{STRUCTURE_1jt8| PDB=1jt8 | SCENE= }}
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'''ARCHAEAL INITIATION FACTOR-1A, AIF-1A'''
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===ARCHAEAL INITIATION FACTOR-1A, AIF-1A===
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==Overview==
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Translation initiation factor 1A (aIF-1A) from the archaeon Methanococcus jannaschii was expressed in Escherichia coli, purified, and characterized in terms of its structure and dynamics using multidimensional NMR methods. The protein was found to be a member of the OB-fold family of RNA-associated proteins, containing a barrel of five beta-strands, a feature that is shared with the homologous eukaryotic translation initiation factor 1A (eIF-1A), as well as the prokaryotic translation initiation factor IF1. External to the beta barrel, aIF-1A contains an alpha-helix at its C-terminal and a flexible loop at its N-terminal, features that are qualitatively similar to those found in eIF-1A, but not present in prokaryotic IF1. The structural model of aIF-1A, when used in combination with primary sequence information for aIF-1A in divergent species, permitted the most-conserved residues on the protein surface to be identified, including the most likely candidates for direct interaction with the 16S ribosomal RNA and other components of the translational apparatus. Several of the conserved surface residues appear to be unique to the archaea. Nitrogen-15 relaxation and amide exchange rate data were used to characterize the internal motions within aIF-1A, providing evidence that the protein surfaces that are most likely to participate in intermolecular interactions are relatively flexible. A model is proposed, suggesting some specific interactions that may occur between aIF-1A and the small subunit of the archaeal ribosome.
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{{ABSTRACT_PUBMED_11714910}}
==About this Structure==
==About this Structure==
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1JT8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JT8 OCA].
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1JT8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JT8 OCA].
==Reference==
==Reference==
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[[Category: Beta barrel]]
[[Category: Beta barrel]]
[[Category: Translation factor]]
[[Category: Translation factor]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 1 20:46:00 2008''

Revision as of 17:46, 1 July 2008

Image:1jt8.png

Template:STRUCTURE 1jt8

ARCHAEAL INITIATION FACTOR-1A, AIF-1A

Template:ABSTRACT PUBMED 11714910

About this Structure

1JT8 is a Single protein structure of sequence from Methanocaldococcus jannaschii. Full experimental information is available from OCA.

Reference

Structure and dynamics of translation initiation factor aIF-1A from the archaeon Methanococcus jannaschii determined by NMR spectroscopy., Li W, Hoffman DW, Protein Sci. 2001 Dec;10(12):2426-38. PMID:11714910

Page seeded by OCA on Tue Jul 1 20:46:00 2008

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