This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


8c3i

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:20, 10 January 2024) (edit) (undo)
 
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 8c3i is ON HOLD until Paper Publication
+
==Dark state of PAS-GAF fragment from Deinococcus radiodurans phytochrome==
-
 
+
<StructureSection load='8c3i' size='340' side='right'caption='[[8c3i]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
Authors: Madan Kumar, S., Sebastian, W.
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[8c3i]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8C3I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8C3I FirstGlance]. <br>
-
Description: Dark state of PAS-GAF fragment from Deinococcus radiodurans phytochrome
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
[[Category: Unreleased Structures]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LBV:3-[2-[(Z)-[3-(2-CARBOXYETHYL)-5-[(Z)-(4-ETHENYL-3-METHYL-5-OXIDANYLIDENE-PYRROL-2-YLIDENE)METHYL]-4-METHYL-PYRROL-1-IUM-2-YLIDENE]METHYL]-5-[(Z)-[(3E)-3-ETHYLIDENE-4-METHYL-5-OXIDANYLIDENE-PYRROLIDIN-2-YLIDENE]METHYL]-4-METHYL-1H-PYRROL-3-YL]PROPANOIC+ACID'>LBV</scene></td></tr>
-
[[Category: Sebastian, W]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8c3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8c3i OCA], [https://pdbe.org/8c3i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8c3i RCSB], [https://www.ebi.ac.uk/pdbsum/8c3i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8c3i ProSAT]</span></td></tr>
-
[[Category: Madan Kumar, S]]
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/BPHY_DEIRA BPHY_DEIRA] Photoreceptor which exists in two forms that are reversibly interconvertible by light: the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift for the far-red maximum. Could also absorb green light. May participate in regulating pigment synthesis like the carotenoid deinoxanthin which could protect the bacterium from intense visible light.
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Deinococcus radiodurans]]
 +
[[Category: Large Structures]]
 +
[[Category: Madan Kumar S]]
 +
[[Category: Sebastian W]]

Current revision

Dark state of PAS-GAF fragment from Deinococcus radiodurans phytochrome

PDB ID 8c3i

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools