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4v5d
From Proteopedia
(Difference between revisions)
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== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[4v5d]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2wdk 2wdk], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2wdl 2wdl], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2wdm 2wdm] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2wdn 2wdn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V5D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4V5D FirstGlance]. <br> | <table><tr><td colspan='2'>[[4v5d]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2wdk 2wdk], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2wdl 2wdl], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2wdm 2wdm] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2wdn 2wdn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V5D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4V5D FirstGlance]. <br> | ||
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8AN:3-AMINO-3-DEOXYADENOSINE+5-(DIHYDROGEN+PHOSPHATE)'>8AN</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PAR:PAROMOMYCIN'>PAR</scene>, <scene name='pdbligand=PHA:PHENYLALANINAL'>PHA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.5Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8AN:3-AMINO-3-DEOXYADENOSINE+5-(DIHYDROGEN+PHOSPHATE)'>8AN</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PAR:PAROMOMYCIN'>PAR</scene>, <scene name='pdbligand=PHA:PHENYLALANINAL'>PHA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4v5d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v5d OCA], [https://pdbe.org/4v5d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4v5d RCSB], [https://www.ebi.ac.uk/pdbsum/4v5d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4v5d ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4v5d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v5d OCA], [https://pdbe.org/4v5d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4v5d RCSB], [https://www.ebi.ac.uk/pdbsum/4v5d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4v5d ProSAT]</span></td></tr> | ||
</table> | </table> | ||
Current revision
Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
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