4v7m

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Current revision (23:07, 26 March 2025) (edit) (undo)
 
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<StructureSection load='4v7m' size='340' side='right'caption='[[4v7m]], [[Resolution|resolution]] 3.45&Aring;' scene=''>
<StructureSection load='4v7m' size='340' side='right'caption='[[4v7m]], [[Resolution|resolution]] 3.45&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4v7m]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3knl 3knl], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3knm 3knm], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3knn 3knn] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3kno 3kno]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V7M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4V7M FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4v7m]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V7M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4V7M FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DPP:DIAMINOPROPANOIC+ACID'>DPP</scene>, <scene name='pdbligand=KBE:BETA-LYSINE'>KBE</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MYN:(2S)-AMINO[(4R)-2-AMINO-1,4,5,6-TETRAHYDROPYRIMIDIN-4-YL]ETHANOIC+ACID'>MYN</scene>, <scene name='pdbligand=UAL:(2Z)-2-AMINO-3-(CARBAMOYLAMINO)PROP-2-ENOIC+ACID'>UAL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.45&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DPP:DIAMINOPROPANOIC+ACID'>DPP</scene>, <scene name='pdbligand=KBE:BETA-LYSINE'>KBE</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MYN:(2S)-AMINO[(4R)-2-AMINO-1,4,5,6-TETRAHYDROPYRIMIDIN-4-YL]ETHANOIC+ACID'>MYN</scene>, <scene name='pdbligand=UAL:(2Z)-2-AMINO-3-(CARBAMOYLAMINO)PROP-2-ENOIC+ACID'>UAL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4v7m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v7m OCA], [https://pdbe.org/4v7m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4v7m RCSB], [https://www.ebi.ac.uk/pdbsum/4v7m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4v7m ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4v7m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v7m OCA], [https://pdbe.org/4v7m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4v7m RCSB], [https://www.ebi.ac.uk/pdbsum/4v7m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4v7m ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[https://www.uniprot.org/uniprot/RS2_THET8 RS2_THET8] Spans the head-body hinge region of the 30S subunit. Is loosely associated with the 30S subunit.[HAMAP-Rule:MF_00291_B]
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[https://www.uniprot.org/uniprot/RS10_THET8 RS10_THET8] Part of the top of the 30S subunit head.[HAMAP-Rule:MF_00508]
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== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==

Current revision

The structures of Capreomycin bound to the 70S ribosome.

PDB ID 4v7m

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OCA

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