8gtf

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'''Unreleased structure'''
 
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The entry 8gtf is ON HOLD until Paper Publication
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==Cryo-EM model of the marine siphophage vB_DshS-R4C stopper-terminator complex==
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<StructureSection load='8gtf' size='340' side='right'caption='[[8gtf]], [[Resolution|resolution]] 6.60&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[8gtf]] is a 18 chain structure with sequence from [https://en.wikipedia.org/wiki/Dinoroseobacter_phage_vB_DshS-R4C Dinoroseobacter phage vB_DshS-R4C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8GTF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8GTF FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 6.6&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8gtf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8gtf OCA], [https://pdbe.org/8gtf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8gtf RCSB], [https://www.ebi.ac.uk/pdbsum/8gtf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8gtf ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A0A4Y6E757_9CAUD A0A4Y6E757_9CAUD]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Tailed bacteriophages (order, Caudovirales) account for the majority of all phages. However, the long flexible tail of siphophages hinders comprehensive investigation of the mechanism of viral gene delivery. Here, we report the atomic capsid and in-situ structures of the tail machine of the marine siphophage, vB_DshS-R4C (R4C), which infects Roseobacter. The R4C virion, comprising 12 distinct structural protein components, has a unique five-fold vertex of the icosahedral capsid that allows genome delivery. The specific position and interaction pattern of the tail tube proteins determine the atypical long rigid tail of R4C, and further provide negative charge distribution within the tail tube. A ratchet mechanism assists in DNA transmission, which is initiated by an absorption device that structurally resembles the phage-like particle, RcGTA. Overall, these results provide in-depth knowledge into the intact structure and underlining DNA delivery mechanism for the ecologically important siphophages.
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Authors: Huang, Y., Sun, H., Wei, S., Zheng, Q., Li, S., Zhang, R., Xia, N.
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Structure and proposed DNA delivery mechanism of a marine roseophage.,Huang Y, Sun H, Wei S, Cai L, Liu L, Jiang Y, Xin J, Chen Z, Que Y, Kong Z, Li T, Yu H, Zhang J, Gu Y, Zheng Q, Li S, Zhang R, Xia N Nat Commun. 2023 Jun 17;14(1):3609. doi: 10.1038/s41467-023-39220-y. PMID:37330604<ref>PMID:37330604</ref>
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Description: Cryo-EM model of the marine siphophage vB_DshS-R4C stopper-terminator complex
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Li, S]]
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<div class="pdbe-citations 8gtf" style="background-color:#fffaf0;"></div>
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[[Category: Zhang, R]]
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== References ==
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[[Category: Zheng, Q]]
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<references/>
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[[Category: Wei, S]]
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__TOC__
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[[Category: Sun, H]]
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</StructureSection>
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[[Category: Xia, N]]
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[[Category: Dinoroseobacter phage vB_DshS-R4C]]
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[[Category: Huang, Y]]
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[[Category: Large Structures]]
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[[Category: Huang Y]]
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[[Category: Li S]]
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[[Category: Sun H]]
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[[Category: Wei S]]
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[[Category: Xia N]]
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[[Category: Zhang R]]
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[[Category: Zheng Q]]

Revision as of 07:24, 12 July 2023

Cryo-EM model of the marine siphophage vB_DshS-R4C stopper-terminator complex

PDB ID 8gtf

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