1l3z

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:1l3z.gif|left|200px]]
+
{{Seed}}
 +
[[Image:1l3z.png|left|200px]]
<!--
<!--
Line 9: Line 10:
{{STRUCTURE_1l3z| PDB=1l3z | SCENE= }}
{{STRUCTURE_1l3z| PDB=1l3z | SCENE= }}
-
'''Crystal Structure Analysis of an RNA Heptamer'''
+
===Crystal Structure Analysis of an RNA Heptamer===
-
==Overview==
+
<!--
-
The crystal structure of an alternating RNA heptamer r(GUAUACA) has been determined to 2.0 A resolution and refined to an R(work) of 17.1% and R(free) of 18.5% using 2797 reflections. The heptamer crystallized in the space group C222 with a unit cell of a = 25.74, b = 106.58, c = 30.26 A and two independent strands in the asymmetric unit. Each heptamer forms a duplex with its symmetry-related strand and each duplex contains six Watson-Crick base pairs and 3'-end adenosine overhangs. Therefore, two kinds of duplex (duplex 1 and duplex 2) are formed. Duplexes 1 stack on each other forming a pseudo-continuous column, which is typical of the RNA packing mode, while duplex 2 is typical of A-DNA packing with its termini in abutting interactions. Overhang adenine residues stack within the duplexes with C3'-endo sugar pucker and C2'-endo sugar pucker in duplexes 1 and 2, respectively. A Na+ ion in the crystal lattice is water bridged to two N1 atoms of symmetry-related A7 bases.
+
The line below this paragraph, {{ABSTRACT_PUBMED_12595546}}, adds the Publication Abstract to the page
 +
(as it appears on PubMed at http://www.pubmed.gov), where 12595546 is the PubMed ID number.
 +
-->
 +
{{ABSTRACT_PUBMED_12595546}}
==About this Structure==
==About this Structure==
Line 24: Line 28:
[[Category: Sundaralingam, M.]]
[[Category: Sundaralingam, M.]]
[[Category: Rna]]
[[Category: Rna]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May 2 23:31:09 2008''
+
 
 +
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 2 11:39:41 2008''

Revision as of 08:39, 2 July 2008

Image:1l3z.png

Template:STRUCTURE 1l3z

Crystal Structure Analysis of an RNA Heptamer

Template:ABSTRACT PUBMED 12595546

About this Structure

Full crystallographic information is available from OCA.

Reference

The crystal structure of an alternating RNA heptamer r(GUAUACA) forming a six base-paired duplex with 3'-end adenine overhangs., Shi K, Pan B, Sundaralingam M, Nucleic Acids Res. 2003 Mar 1;31(5):1392-7. PMID:12595546

Page seeded by OCA on Wed Jul 2 11:39:41 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1l3z"
Personal tools