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5cyg

From Proteopedia

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Crystal Structure of isoform 2 of uridine phosphorylase from Schistosoma mansoni APO form

Structural highlights

5cyg is a 2 chain structure with sequence from Schistosoma mansoni. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 2.017Å
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

UPPB_SCHMA

Publication Abstract from PubMed

Reports of Schistosoma mansoni strains resistant to praziquantel, the only therapeutic strategy available for the treatment of schistosomiasis, have motivated the scientific community towards the search for new possible therapies. Biochemical characterization of the parasite's metabolism is an essential component for the rational development of new therapeutic alternatives. One of the so far uncharacterized enzymes is uridine phosphorylase (UP) (EC 2.4.2.3), for which the parasite genome presents two isoforms (SmUPa and SmUPb) that share 92% sequence identity. In this paper, we present crystal structures for SmUPa and SmUPb in their free states as well as bound to different ligands. This we have complemented by enzyme kinetic characterization and phylogenetic analyses. Both enzymes present an overall fold and active site structure similar to other known UPs. The kinetic analyses showed conclusively that SmUPa is a regular uridine phosphorylase but by contrast SmUPb presented no detectable activity. This is particularly noteworthy given the high level of sequence identity between the two isoforms and is probably the result of the significant differences observed for SmUPb in the vicinity of the active site itself, suggesting that it is not a UP at all. On the other hand, it was not possible to identify an alternative function for SmUPb, although our phylogenetic analyses and expression data suggest that SmUPb is still functional and plays a role in parasite metabolism. The unusual UPb isoform may open up new opportunities for understanding unique features of S. mansoni metabolism.

Analysis of two Schistosoma mansoni uridine phosphorylases isoforms suggests the emergence of a protein with a non-canonical function.,da Silva Neto AM, Torini de Souza JR, Romanelo L, Cassago A, Serrao VH, DeMarco R, Brandao-Neto J, Garratt RC, Pereira HD Biochimie. 2016 Feb 18. pii: S0300-9084(16)00050-X. doi:, 10.1016/j.biochi.2016.02.007. PMID:26898674^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ da Silva Neto AM, Torini de Souza JR, Romanelo L, Cassago A, Serrao VH, DeMarco R, Brandao-Neto J, Garratt RC, Pereira HD. Analysis of two Schistosoma mansoni uridine phosphorylases isoforms suggests the emergence of a protein with a non-canonical function. Biochimie. 2016 Feb 18. pii: S0300-9084(16)00050-X. doi:, 10.1016/j.biochi.2016.02.007. PMID:26898674 doi:http://dx.doi.org/10.1016/j.biochi.2016.02.007

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5cyg"

@@ Line 4: / Line 4: @@
 == Structural highlights ==
 <table><tr><td colspan='2'>[[5cyg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Schistosoma_mansoni Schistosoma mansoni]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CYG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CYG FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cyg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cyg OCA], [https://pdbe.org/5cyg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cyg RCSB], [https://www.ebi.ac.uk/pdbsum/5cyg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cyg ProSAT]</span></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.017&#8491;</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cyg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cyg OCA], [https://pdbe.org/5cyg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cyg RCSB], [https://www.ebi.ac.uk/pdbsum/5cyg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cyg ProSAT]</span></td></tr>
 </table>
 == Function ==

5cyg

From Proteopedia

Current revision

Crystal Structure of isoform 2 of uridine phosphorylase from Schistosoma mansoni APO form

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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