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1m01

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[[Image:1m01.gif|left|200px]]
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{{STRUCTURE_1m01| PDB=1m01 | SCENE= }}
{{STRUCTURE_1m01| PDB=1m01 | SCENE= }}
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'''Wildtype Streptomyces plicatus beta-hexosaminidase in complex with product (GlcNAc)'''
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===Wildtype Streptomyces plicatus beta-hexosaminidase in complex with product (GlcNAc)===
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==Overview==
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SpHex, a retaining family 20 glycosidase from Streptomyces plicatus, catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. Accumulating evidence suggests that the hydrolytic mechanism involves substrate-assisted catalysis wherein the 2-acetamido substituent acts as a nucleophile to form an oxazolinium ion intermediate. The role of a conserved aspartate residue (D313) in the active site of SpHex was investigated through kinetic and structural analyses of two variant enzymes, D313A and D313N. Three-dimensional structures of the wild-type and variant enzymes in product complexes with N-acetyl-d-glucosamine revealed substantial differences. In the D313A variant the 2-acetamido group was found in two conformations of which only one is able to aid in catalysis through anchimeric assistance. The mutation D313N results in a steric clash in the active site between Asn-313 and the 2-acetamido group preventing the 2-acetamido group from providing anchimeric assistance, consistent with the large reduction in catalytic efficiency and the insensitivity of this variant to chemical rescue. By comparison, the D313A mutation results in a shift in a shift in the pH optimum and a modest decrease in activity that can be rescued by using azide as an exogenous nucleophile. These structural and kinetic data provide evidence that Asp-313 stabilizes the transition states flanking the oxazoline intermediate and also assists to correctly orient the 2-acetamido group for catalysis. Based on analogous conserved residues in the family 18 chitinases and family 56 hyaluronidases, the roles played by the Asp-313 residue is likely general for all hexosaminidases using a mechanism involving substrate-assisted catalysis.
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(as it appears on PubMed at http://www.pubmed.gov), where 12171933 is the PubMed ID number.
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{{ABSTRACT_PUBMED_12171933}}
==About this Structure==
==About this Structure==
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[[Category: Substrate assisted catalysis]]
[[Category: Substrate assisted catalysis]]
[[Category: Tim barrel]]
[[Category: Tim barrel]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 00:28:05 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 2 22:54:56 2008''

Revision as of 19:54, 2 July 2008

Image:1m01.png

Template:STRUCTURE 1m01

Wildtype Streptomyces plicatus beta-hexosaminidase in complex with product (GlcNAc)

Template:ABSTRACT PUBMED 12171933

About this Structure

1M01 is a Single protein structure of sequence from Streptomyces plicatus. Full crystallographic information is available from OCA.

Reference

Aspartate 313 in the Streptomyces plicatus hexosaminidase plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state., Williams SJ, Mark BL, Vocadlo DJ, James MN, Withers SG, J Biol Chem. 2002 Oct 18;277(42):40055-65. Epub 2002 Aug 8. PMID:12171933

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