User:Eric Martz/Sandbox 19
From Proteopedia
(Difference between revisions)
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1. The PDB file generated by [[PACUPP]] was uploaded to Proteopedia: [[Image:2j1n cavities fine small 3 5 20 24.pdb]]. | 1. The PDB file generated by [[PACUPP]] was uploaded to Proteopedia: [[Image:2j1n cavities fine small 3 5 20 24.pdb]]. | ||
| - | 2. | + | 2. Within PACUPP, default scene was modified (using PACUPP Peel and Extend commands). A state script was saved (''write 2j1n.spt''). |
| - | 3. Using a [[plain text editor]], | + | 3. Using a [[plain text editor]], ''load'' command near the top of the state script was commented out by putting # before ''load''. |
| - | 4. | + | 4. The uploaded PACUPP PDB file was loaded into the present page using the [[SAT]]. |
| - | 5. While in the SAT, | + | 5. While in the SAT, the saved state script 2j1n.spt was dropped into JSmol. |
| - | 6. | + | 6. The scene was saved, getting <scene name='99/995028/Pacupp/1'>this scene #1</scene>. |
7. I loaded the previous scene in the SAT and manually issued the Jmol commands ''select protein; cartoon off;'' producing <scene name='99/995028/Pacupp/2'>this scene</scene>. I did nothing to remove PACUPP's ''echo'' text that was at the top of scene #1. Apparently Proteopedia's SAT removed it automatically. | 7. I loaded the previous scene in the SAT and manually issued the Jmol commands ''select protein; cartoon off;'' producing <scene name='99/995028/Pacupp/2'>this scene</scene>. I did nothing to remove PACUPP's ''echo'' text that was at the top of scene #1. Apparently Proteopedia's SAT removed it automatically. | ||
Revision as of 16:43, 16 September 2023
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