AlphaFold/Index
From Proteopedia
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Here are pages in Proteopedia that relate to AlphaFold. | Here are pages in Proteopedia that relate to AlphaFold. | ||
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| + | ==Introductions to AlphaFold== | ||
*[[AlphaFold]]. An introduction and overview. | *[[AlphaFold]]. An introduction and overview. | ||
*[[Theoretical models]] describes the breakthrough in structure prediction made by AlphaFold in [[CASP]] 14 (2020) and the continued pre-eminence of AlphaFold in CASP 15 [2022]. | *[[Theoretical models]] describes the breakthrough in structure prediction made by AlphaFold in [[CASP]] 14 (2020) and the continued pre-eminence of AlphaFold in CASP 15 [2022]. | ||
| - | == | + | ==How To Make Predictions== |
*[[How to predict structures with AlphaFold]] when the [https://alphafold.ebi.ac.uk/ AlphaFold Database] does not already have what you want. | *[[How to predict structures with AlphaFold]] when the [https://alphafold.ebi.ac.uk/ AlphaFold Database] does not already have what you want. | ||
*[[Joining AlphaFold predictions for halves of a molecule]], when the sequence is too long for AlphaFold to handle. | *[[Joining AlphaFold predictions for halves of a molecule]], when the sequence is too long for AlphaFold to handle. | ||
Revision as of 23:53, 28 September 2023
Here are pages in Proteopedia that relate to AlphaFold.
Contents |
Introductions to AlphaFold
- AlphaFold. An introduction and overview.
- Theoretical models describes the breakthrough in structure prediction made by AlphaFold in CASP 14 (2020) and the continued pre-eminence of AlphaFold in CASP 15 [2022].
How To Make Predictions
- How to predict structures with AlphaFold when the AlphaFold Database does not already have what you want.
- Joining AlphaFold predictions for halves of a molecule, when the sequence is too long for AlphaFold to handle.
Interpreting Predictions
- AlphaFold pLDDT and expected distance error
- Calculating GDT TS the Global Distance Test Total Score, one of the metrics used for judging accuracy of predictions in the CASP competitions.
Examples of Predictions
- AlphaFold2 examples from CASP 14. A detailed analysis of several AlphaFold predictions compared with empirically-determined structures.
