Ribosome 3D structures
From Proteopedia
(Difference between revisions)
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**[[2zm6]], [[1n36]], [[1j5e]], [[3oto]], [[5wnq]], [[5wnr]], [[5wns]], [[5wnt]], [[5wnu]], [[5wnv]] - Tt30S ribosomal subunit+THX+16S rRNA – Thermus thermophiles<br /> | **[[2zm6]], [[1n36]], [[1j5e]], [[3oto]], [[5wnq]], [[5wnr]], [[5wns]], [[5wnt]], [[5wnu]], [[5wnv]] - Tt30S ribosomal subunit+THX+16S rRNA – Thermus thermophiles<br /> | ||
**[[2vqe]], [[2vqf]], [[2uuc]], 2e5l]], [[2uu9]], [[2uua]], [[2uub]], [[6cao]], [[6caq]], [[6cas]] - Tt30S ribosomal subunit+16S rRNA+RNA fragment<br /> | **[[2vqe]], [[2vqf]], [[2uuc]], 2e5l]], [[2uu9]], [[2uua]], [[2uub]], [[6cao]], [[6caq]], [[6cas]] - Tt30S ribosomal subunit+16S rRNA+RNA fragment<br /> | ||
| - | **[[ | + | **[[4v6c]], [[1i94]], [[1fka]], [[4dr1]] - Tt30S ribosomal subunit+16S rRNA<br /> |
**[[4duy]], [[4duz]], [[4dv0]], [[4dv1]], [[4dv2]], [[4dv3]], [[4dv4]], [[4dv5]], [[4dv6]], [[4dv7]] - Tt30S ribosomal subunit+16S rRNA (mutant)<br /> | **[[4duy]], [[4duz]], [[4dv0]], [[4dv1]], [[4dv2]], [[4dv3]], [[4dv4]], [[4dv5]], [[4dv6]], [[4dv7]] - Tt30S ribosomal subunit+16S rRNA (mutant)<br /> | ||
**[[4dr4]], [[4b3m]], [[4b3r]], [[4b3s]], [[4b3t]] - Tt30S ribosomal subunit+16S rRNA + mRNA<br /> | **[[4dr4]], [[4b3m]], [[4b3r]], [[4b3s]], [[4b3t]] - Tt30S ribosomal subunit+16S rRNA + mRNA<br /> | ||
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**[[3t1h]] - Tt30S ribosomal subunit+16S rRNA+tRNA Lys +mRNA<br /> | **[[3t1h]] - Tt30S ribosomal subunit+16S rRNA+tRNA Lys +mRNA<br /> | ||
**[[6dti]], [[6mkn]] - Tt30S ribosomal subunit+16S rRNA+tRNA Arg +mRNA<br /> | **[[6dti]], [[6mkn]] - Tt30S ribosomal subunit+16S rRNA+tRNA Arg +mRNA<br /> | ||
| - | **[[ | + | **[[4v8j]] - Tt30S ribosomal subunit+16S rRNA+tRNA Phe+tRNA fMet+mRNA<br /> |
**[[1xnq]], [[1xnr]] - Tt30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S rRNA<br /> | **[[1xnq]], [[1xnr]] - Tt30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S rRNA<br /> | ||
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**[[1i95]], [[1i97]], [[2hhh]], [[2f4v]], [[4dr3]], [[6cap]], [[6car]] - Tt30S ribosomal subunit+16S rRNA+antibiotic<br /> | **[[1i95]], [[1i97]], [[2hhh]], [[2f4v]], [[4dr3]], [[6cap]], [[6car]] - Tt30S ribosomal subunit+16S rRNA+antibiotic<br /> | ||
**[[1hnx]], [[1hnw]], [[1hnz]], [[1fjg]], [[3t1y]], [[4aqy]], [[4dr5]], [[4dr6]], [[4dr7]], [[4khp]], [[7dug]], [[7duh]] [[7dui]], [[7duj]], [[7duk]], [[7dul]] - Tt30S ribosomal subunit+16S rRNA+mRNA fragment+antibiotic <br /> | **[[1hnx]], [[1hnw]], [[1hnz]], [[1fjg]], [[3t1y]], [[4aqy]], [[4dr5]], [[4dr6]], [[4dr7]], [[4khp]], [[7dug]], [[7duh]] [[7dui]], [[7duj]], [[7duk]], [[7dul]] - Tt30S ribosomal subunit+16S rRNA+mRNA fragment+antibiotic <br /> | ||
| - | **[[ | + | **[[4v7l]] - Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S rRNA+ antibiotic<br /> |
**[[6mpf]], [[6mpi]] - Tt30S ribosomal subunit +A-site tRNA-Arg +mRNA +16S rRNA+ antibiotic<br /> | **[[6mpf]], [[6mpi]] - Tt30S ribosomal subunit +A-site tRNA-Arg +mRNA +16S rRNA+ antibiotic<br /> | ||
**[[6ypu]], [[6ytf]], [[7m4u]] – Ab30S + antibiotic - Cryo EM<br /> | **[[6ypu]], [[6ytf]], [[7m4u]] – Ab30S + antibiotic - Cryo EM<br /> | ||
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*30S subunit + ribosome recycling factor | *30S subunit + ribosome recycling factor | ||
| - | **[[ | + | **[[4v9d]] - Ec30S ribosomal subunit+16S rRNA+ribosome recycling factor + mRNA + tRNA <br /> |
*30S subunit + elongation factor | *30S subunit + elongation factor | ||
| - | **[[ | + | **[[4v90]] - Tt30S ribosomal subunit+THX+RNA +16S rRNA+elongation factor G<br /> |
**[[6enu]] - Ec30S ribosomal subunit+THX+RNA +16S rRNA+elongation factor P – Cryo EM<br /> | **[[6enu]] - Ec30S ribosomal subunit+THX+RNA +16S rRNA+elongation factor P – Cryo EM<br /> | ||
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**[[2ftc]] – b50S subunit – bovine - Cryo_EM<br /> | **[[2ftc]] – b50S subunit – bovine - Cryo_EM<br /> | ||
**[[5mmi]], [[5x8t]] – s50S ribosomal subunit - Cryo-EM<br /> | **[[5mmi]], [[5x8t]] – s50S ribosomal subunit - Cryo-EM<br /> | ||
| - | **[[ | + | **[[4v7l]], [[4v7m]], [[4v8j]], [[4v8n]], [[4v9i]] - Tt50S subunit <br /> |
| - | **[[ | + | **[[4v6c]] - Ec50S subunit<br /> |
**[[6gbz]], [[6gc0]], [[6gc4]], [[6gc6]], [[6gc7]], [[6gc8]], [[6ofx]], [[6wnt]], [[7bv8]], [[7lv0]], [[7lvk]], [[8c91]] - Ec50S subunit - Cryo_EM<br /> | **[[6gbz]], [[6gc0]], [[6gc4]], [[6gc6]], [[6gc7]], [[6gc8]], [[6ofx]], [[6wnt]], [[7bv8]], [[7lv0]], [[7lvk]], [[8c91]] - Ec50S subunit - Cryo_EM<br /> | ||
**[[2zjq]], [[2zjr]], [[1nkw]] - Dr50S subunit – Deinococcus radiodurans<br /> | **[[2zjq]], [[2zjr]], [[1nkw]] - Dr50S subunit – Deinococcus radiodurans<br /> | ||
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*60S subunit + various proteins | *60S subunit + various proteins | ||
| - | **[[ | + | **[[4v6x]] – h60S subunit + P0 + P1 + P2 - Cryo EM<br /> |
**[[7ow7]] – h60S subunit + eIF6 - Cryo EM<br /> | **[[7ow7]] – h60S subunit + eIF6 - Cryo EM<br /> | ||
**[[8a3d]] – h60S subunit + eIF6 + antibiotics - Cryo EM<br /> | **[[8a3d]] – h60S subunit + eIF6 + antibiotics - Cryo EM<br /> | ||
**[[7f5s]] – h60S subunit + METTL18 - Cryo EM<br /> | **[[7f5s]] – h60S subunit + METTL18 - Cryo EM<br /> | ||
**[[6swa]] – m60S subunit + Ebp1 - Cryo EM<br /> | **[[6swa]] – m60S subunit + Ebp1 - Cryo EM<br /> | ||
| - | **[[ | + | **[[4v6i]] – y60S subunit + P0 + P1 + P2 - Cryo EM<br /> |
**[[4v8t]] – y60S subunit + P0 + P1 + P2 + ARX1 - Cryo EM<br /> | **[[4v8t]] – y60S subunit + P0 + P1 + P2 + ARX1 - Cryo EM<br /> | ||
| - | **[[ | + | **[[4v7r]] – y60S subunit + 5S rRNA + 5.8S rRNA + 25S rRNA + P0<br /> |
**[[6em5]], [[6em4]], [[6em3]], [[6elz]], [[6em1]] – y60S ribosomal subunit + BRX1 + 5.8S rRNA + 25S RNA + CIC1 + ERB1 + HAS1 + MRT4 + NIP7 + ribosome biogenesis proteins + EIF-6 + nucleolar proteins – Cryo-EM<br /> | **[[6em5]], [[6em4]], [[6em3]], [[6elz]], [[6em1]] – y60S ribosomal subunit + BRX1 + 5.8S rRNA + 25S RNA + CIC1 + ERB1 + HAS1 + MRT4 + NIP7 + ribosome biogenesis proteins + EIF-6 + nucleolar proteins – Cryo-EM<br /> | ||
**[[6cb1]], [[6c0f]], [[5z3g]] – y60S ribosomal subunit + 5.8S rRNA + 25S RNA + CIC1 + HAS1 + MRT4 + NIP7 + ribosome biogenesis proteins + RNA-processing protein + nucleolar proteins + pescadillo homolog – Cryo-EM<br /> | **[[6cb1]], [[6c0f]], [[5z3g]] – y60S ribosomal subunit + 5.8S rRNA + 25S RNA + CIC1 + HAS1 + MRT4 + NIP7 + ribosome biogenesis proteins + RNA-processing protein + nucleolar proteins + pescadillo homolog – Cryo-EM<br /> | ||
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**[[5anc]], [[5anb]], [[5an9]] – sm60S subunit + P0 + SbdS + EF-Tu – slime mold - Cryo EM<br /> | **[[5anc]], [[5anb]], [[5an9]] – sm60S subunit + P0 + SbdS + EF-Tu – slime mold - Cryo EM<br /> | ||
**[[6qkl]] – sm60S subunit + P0 + SbdS + EIF-6 - Cryo EM<br /> | **[[6qkl]] – sm60S subunit + P0 + SbdS + EIF-6 - Cryo EM<br /> | ||
| - | **[[ | + | **[[4v6w]] – Dm60S subunit + P0 – Drosophila melanogaster - Cryo EM<br /> |
**[[4v8p]] - Tet60S subunit+ 26S rRNA+ translation initiation factor 6 <br /> | **[[4v8p]] - Tet60S subunit+ 26S rRNA+ translation initiation factor 6 <br /> | ||
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*80S ribosome | *80S ribosome | ||
| - | **[[4ug0]], [[5t2c]], [[6ip5 | + | **[[4ug0]], [[5t2c]], [[6ip5]], [[6qzp]], [[6w6l]], [[6y0g]], [[6y2l]], [[6y57]], [[7bhp]], [[7xnx]], [[7xny]], [[7zfw]], [[8g5y]], [[8g5z]], [[[8g60]], [8g6j]] – hRibosome - Cryo-EM<br /> |
**[[4v5z]] - dRibosome – dog - Cryo-EM <br /> | **[[4v5z]] - dRibosome – dog - Cryo-EM <br /> | ||
**[[6hcm]], [[6hcq]], [[6sgc]], [[6hcf]], [[6gz3]], [[6gz4]], [[6gz5]], [[7mdz]], [[7o7y]], [[7o7z]], [[7o81]], [[8btk]], [[8p2k]] – rRibosome - Cryo-EM<br /> | **[[6hcm]], [[6hcq]], [[6sgc]], [[6hcf]], [[6gz3]], [[6gz4]], [[6gz5]], [[7mdz]], [[7o7y]], [[7o7z]], [[7o81]], [[8btk]], [[8p2k]] – rRibosome - Cryo-EM<br /> | ||
Revision as of 06:36, 2 November 2023
Updated on 02-November-2023 For a general description of the protein see Ribosome
Proteopedia Page Contributors and Editors (what is this?)
Michal Harel, Wayne Decatur, Joel L. Sussman, Jaime Prilusky, Alexander Berchansky
